Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0756 ATGCCTTTCATTAGGAGCATAATCCGTGATGTGAGATCGAGGTCCCACCGGCTGGTCAAGGACGGTTCGGTGGAGCCCGTCCTCACCGATGGCCTGAAGCAGAGCTGCTGGGCCAACATGCCACAGGAGCTTCTCAGAGAGGTGTTGGCCAGAATCGAAGCATCCGAAAGCTCTTGGCCTGCTCGTCGGAGCGTGGTGGCTTGCGCCGGTGTGTGCCGGACTTGGAGGCTCATCACCAAGGCCATCGTCAACACGCCTCAAGTTTCCTCTGACATCACCTTCCCCATCTCTGTTAAGCAGCATGGCCCGAGGGAAAATCCCCTCCAGTGCTTCATAAAGCGCCACAGATCAACCCAGACATATTATTTGTTTCTCAGTTTAACTAACGCATTAGGTGATAATGGAAAGTTTCTTCTTGCAGCACGCAAGTGTAGACATGCCACCTGCACAGATTATATCATCTCTCTTGATGCTGATGATATGTCAAAGGGAAGCAACACTTATGTTGGGAAACTGAGGGGTCCAAGGAGAATGAAATGTGTCATGGACACCATTCCTGCCTCTGCAATTCAACCAGGAGGGGTGAGACAATTTGAACAGCCTGAGTTTTCTCCGAGCAATGTAGAGAAGCTTCCATTATTCCCATTTTTTAGGTCAAAATCAAATAGAATTGAAAACTCTATATCTAGATCCCTGGGTAATGATGCGGTGCTAGTGTTAAAAAGTAAGCCTCCAAGGTGGCATGAGCAGCTCCAATGTTGGTGTTTGAACTTCAAAGGACGAGTCACAGTTGCTTCAGTCAAGAACTTTCAGCTGGTGGCTTCCCCAGAAAATGGACCTTCTGCAGCAGAACATGAGAAGGTCATCCTCCAATTTGGTAAAGTAGGGAAGGATTTGTTTACAATGGATTACCAGTACCCCATCTCAGCATTTCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGAAACCAAAATTTCTCGTGAATGA 987 0.4782 MPFIRSIIRDVRSRSHRLVKDGSVEPVLTDGLKQSCWANMPQELLREVLARIEASESSWPARRSVVACAGVCRTWRLITKAIVNTPQVSSDITFPISVKQHGPRENPLQCFIKRHRSTQTYYLFLSLTNALGDNGKFLLAARKCRHATCTDYIISLDADDMSKGSNTYVGKLRGPRRMKCVMDTIPASAIQPGGVRQFEQPEFSPSNVEKLPLFPFFRSKSNRIENSISRSLGNDAVLVLKSKPPRWHEQLQCWCLNFKGRVTVASVKNFQLVASPENGPSAAEHEKVILQFGKVGKDLFTMDYQYPISAFQAFAICLSSFETKISRE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0756 328 Pfam F-box domain 37 83 IPR001810 GO:0005515
Lele24g0756 328 ProSitePatterns Tub family signature 1. 258 271 IPR018066 -
Lele24g0756 328 PANTHER TUBBY-RELATED 173 325 - -
Lele24g0756 328 Pfam Tub family 173 323 IPR000007 -
Lele24g0756 328 Gene3D Tubby Protein; Chain A 174 322 IPR025659 -
Lele24g0756 328 PRINTS Tubby superfamily signature 157 184 IPR000007 -
Lele24g0756 328 PRINTS Tubby superfamily signature 285 304 IPR000007 -
Lele24g0756 328 PRINTS Tubby superfamily signature 240 257 IPR000007 -
Lele24g0756 328 PRINTS Tubby superfamily signature 306 328 IPR000007 -
Lele24g0756 328 PRINTS Tubby superfamily signature 258 274 IPR000007 -
Lele24g0756 328 SUPERFAMILY F-box domain 30 80 IPR036047 GO:0005515
Lele24g0756 328 Gene3D Tubby Protein; Chain A 94 173 IPR025659 -
Lele24g0756 328 SUPERFAMILY Tubby C-terminal domain-like 86 326 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0756 Lele-ChrLele24 5067934 5070676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0756 29 324 TUB Transcription Factor Family AT1G47270 45.833 1.89e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele24g0756 Tub 4.3e-56 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0756 24 5067934 5070676 Lele24g0756 24 5067934 5070676 ECH
Lele21g0783 21 5117057 5119899 Lele24g0756 24 5067934 5070676 hybridization
Lele22g0768 22 5018634 5021362 Lele24g0756 24 5067934 5070676 hybridization