Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0750 ATGGTTGTTGGCCGCTGCACTTGCACAAGTAGTAAAGGATCCGGAGTCACGAATAAGAATACTGTTTTGAAGAGTTATCATGCAGAAGAAGGGGCGGGAGAGAGAGAAGGCAGTGAGCTTTGTGCCCCTTCGTCTCTTTCAAAATCCATGAAAGGCTATGACAATGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCACTACAGGAGAAGATGCAAGATTCGGGCACCCTGCTGCAACGAGCTGTTCTCCTGCCGTCATTGTCATAACGAGGCAACGAGCATGTTGAGGAACCCCTTTGATCGACACGAAATGGTTCGCCAAGATGTGAAACAAGTTGTTTGTTCAGTTTGTGATACAGAGCAGCCAGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACACATGCAAATTCTTCGATGATGATACGGAGAAGCAGCCGTTTCATTGCGATGATTGTGGAATCTGCAGAATTGGGGGTCGTGATAACTTTTTCCACTGCAACAAGTGCGGGTCTTGCTATTCACTTGGTCTACTTGATAATCATTTATGTGTAGAGGACTCCATGAGGCATCACTGTCCCATATGTTATGAGTACCTTTTTGATTCAGTGAAGGATACTACCGTTATGAAATGTGGTCACACGACGCATTATGAATGTTTCCAAGAGATGATCAAACGTGAAAAGTATTGTTGCCCCATATGTTCCAAGTCAGCCATCGACATGTCAATGATCTGGAAGATGATTGACGAAGAGATTGAAGCAACTCTCATGCCTGAAGATTATCGGCACAGGAAGGTTTGGATACTGTGTAACGACTGCAATGACACAACAGAAGTAAACTTCCACATAGTTGGGCAAAAATGTGGGCACTGCAGATCATATAACACTCGTGAAATTGCTCCACCTGCTCTTCCTCAATGA 951 0.4448 MVVGRCTCTSSKGSGVTNKNTVLKSYHAEEGAGEREGSELCAPSSLSKSMKGYDNERLDFGKMGYGCKHYRRRCKIRAPCCNELFSCRHCHNEATSMLRNPFDRHEMVRQDVKQVVCSVCDTEQPVAQVCTNCGVKMGEYFCNTCKFFDDDTEKQPFHCDDCGICRIGGRDNFFHCNKCGSCYSLGLLDNHLCVEDSMRHHCPICYEYLFDSVKDTTVMKCGHTTHYECFQEMIKREKYCCPICSKSAIDMSMIWKMIDEEIEATLMPEDYRHRKVWILCNDCNDTTEVNFHIVGQKCGHCRSYNTREIAPPALPQ 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0750 316 ProSiteProfiles Zinc finger CHY-type profile. 60 135 IPR008913 GO:0008270
Lele24g0750 316 SUPERFAMILY Zinc hairpin stack 138 195 IPR037275 -
Lele24g0750 316 SUPERFAMILY CHY zinc finger-like 64 136 IPR037274 GO:0008270
Lele24g0750 316 SMART ring_2 202 244 IPR001841 -
Lele24g0750 316 Pfam Ring finger domain 201 244 IPR001841 -
Lele24g0750 316 SUPERFAMILY RING/U-box 201 253 - -
Lele24g0750 316 FunFam RING finger and CHY zinc finger domain-containing protein 1 273 315 - -
Lele24g0750 316 ProSiteProfiles Zinc finger CTCHY-type profile. 137 201 IPR017921 -
Lele24g0750 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 274 IPR013083 -
Lele24g0750 316 ProSiteProfiles Zinc finger RING-type profile. 202 245 IPR001841 -
Lele24g0750 316 Pfam CHY zinc finger 67 147 IPR008913 GO:0008270
Lele24g0750 316 Pfam Zinc-ribbon 249 307 IPR039512 -
Lele24g0750 316 Gene3D - 275 312 - -
Lele24g0750 316 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 49 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0750 Lele-ChrLele24 5031461 5034958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0750 59 315 C2H2 Transcription Factor Family AT3G18290 41.825 1.37e-57 198
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0750 24 5031461 5034958 Lele24g0750 24 5031461 5034958 ECH
Lele21g0777 21 5090530 5093368 Lele24g0750 24 5031461 5034958 hybridization
Lele22g0762 22 4990535 4993228 Lele24g0750 24 5031461 5034958 hybridization