Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0747 ATGGCTCGCCCTTCAAAGCCTCAGGAGTCTTCCGACGAACCTATGTCGAACGGTTCGAGTTCGTCGGAGGAGGAGCAGGTCAACGATCAGATCAACGATGAGGAGGACGAAGAGGAGCTCCAAGCTGTGGCTCGCTCCGCCAGCTCTGATGATGAAGATGCTGCCGATGACAATTCGATCGATTCCGATGGATATGGTGACGAGGAGGAACAGGTTGAAGGTGTTGTCGATCCTGAAATTGCTAGGCGGGAAAAGGCCAGATTGTATGAAATGCAGAAGCTGAAGAAACAAAAGATTCAGGAGATGCTGGATGAGCAAAATGCTGCCATTGATGCTGATATGAACAACAAGGGGAAGGGTCGCTTGAAGTATCTCCTACAGCAAACTGAACTGTTTGCTCATTTTGCAAAAGGTGACCAATCATCTCAAAAGAAGTCCAAGGGAAGGGGTCGGCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTATCTTAAAGAAGAGGAAGATGGATTAGCAGGAAACACACGATTAGTGATGCAACCATCATGTATTCAAGGAAAGATGAGAGATTACCAACTTGCTGGCTTAAACTGGCTTATACGATTGTATGAGAATGGTATAAATGGAATTCTGGCAGATGAGATGGGGCTTGGTAAAACACTACAAACTATCTCCTTATTGGGCTATTTGCATGAGTTTAGAGGAATAACTGGTCCTCACATGGTTGTTGCTCCAAAATCTACACTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCCATCTTGCGGGCAATAAAGTTCCTTGGCAATCCTGAAGAAAGGAGGCATATCAGAGAGGAATTATTAGTTGCTGGGAAGTTTGATGTGTGTGTCACCAGTTTTGAAATGGCCATCAAGGAGAAGTCTGCTTTGCGTCGTTTCAGTTGGCGCTATATAATTATAGATGAAGCCCATCGAATCAAAAATGAGAATTCCCTCCTTTCCAAGACAATGAGGCTCTATAATACAAATTATCGCCTTCTTATCACTGGTACACCACTCCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAATTTTCTTCTTCCAGAAATATTTAGTTCTTCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGACAATGACCAGCAGGAGGTTGTTCAACAATTGCACAAGGTCCTCCGGCCATTTCTCCTTCGAAGGTTGAAATCAGATGTTGAAAAAGGTTTGCCACCAAAAAAGGAAACCATTCTTAAAGTAGGCATGTCGCAAATGCAGAAGCACTATTATAAGGCTTTACTGCAGAAGGATCTTGAGGTTGTTAATGCTGGTGGAGAACGGAAACGTCTCCTGAATATAGCCATGCAACTACGTAAATGTTGTAATCATCCATATCTTTTTCAAGGTGCTGAACCTGGTCCACCCTATACGACAGGGGACCATCTTATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAATTGCTTCCTAAATTAAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGACTGCTAGACATACTCGAAGATTATCTGATGTTTCGTGGATACCAGTATTGCCGTATTGATGGTAATACTGGTGGAGAAGATCGTGACTCTTCCATTGAGACTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGGGCTGGAGGCCTTGGCATTAATCTTGCCACTGCTGATGTTGTCATCCTTTATGACAGTGATTGGAACCCACAGGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGCCAAAAGAAAGAAGTTCAAGTTTTCCGATTCTGCACTGAGTACACAATTGAGGAGAAGGTCATTGAAAGGGCTTACAAAAAGCTAGCCCTTGATGCTCTTGTGATTCAGCAAGGACGGTTAGCAGAGCAGAAGACTGTAAATAAAGATGAGTTACTTCAGATGGTCAGATTTGGTGCTGAAATGGTTTTCAGTTCTAAGGATAGTACAATTACCGATGAGGATATTGACAGGATTATTGCTAAAGGAGAGGAAGCAACAGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGATGCTATAAAATTTAAGATGGATGACACTGCCGAGTTGTATGATTTTGATGATGAAAAGGATGAGAATAAAGTTGATTTCAAAAAAATTGTAAGCGATAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGCAACTATTCTGAGTCTGAATATTTTAAGCAAACACTGCGCCAAGGCGGCCCTACTAAGCCAAAAGAGCCCCGTATTCCTAGGATGCCTCAGCTGCATGATTTCCAGTTCTTCAATACACAAAGGCTGAGTGAGTTGTATGAAAAGGAAGTACGCTATCTCATGCAAACACATCAGAAGAATCAGGTAAAAGACTCCATAGATGTTGACGAACCAGAAGAGGTGGGAGATCCCTTAACTGCTGAAGAGCTGGAAGAAAAGGAGCGCTTGCTGGAGGAGGGATTTTCTTCATGGAGCCGAAGGGATTTCAATACTTTCATTAGAGCCTGTGAAAAGTATGGCCGAAATGATATAAAGAGTATTGCTTCTGAGATGGAAGGAAAATCAGAGGAGGAAGTTGAACGATATGCAAAGGTTTTCAAAGAAAGATATAAGGAGTTAAATGATTATGATAGAATTATCAAAAACATTGAAAGAGGGGAGGCTAGAATTTCTAGAAAAGATGAGATCATGAAAGCTATTGGGAAGAAGCTGGATCGATACAAGAATCCTTGGCTGGAGTTGAAGATACAATATGGGCAAAACAAAGGAAAGTTATACAATGAAGAATGTGATAGATTCATGATATGCATGGTTCACAAACTCGGCTATGGGAATTGGGATGAGTTGAAGGCAGCATTTCGAACATCACCTTTATTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACACAGGAACTTGCTAGGAGATGCGACACGCTTATTAGGTTGGTAGAGAAGGAAAACCAAGAATACGATGAGAGAGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCTAAGAGCATGACCTCATCAAAACGGGGCTCAGCTAGACAGGCAGACGGTTCATCATCGGTAAAGAAGCGCAGACAGTTAACTATGGATGATTATGTTAGCACGGTTTGCTTTTTGGCTTTGCAGATTATGAATTATACGCCTTCTTTATTGTCATGGAATTTGCTTGTGCATATACTGAATTTGACCATGATATTTGTGACAGGGAAAAAGGAGAAAATAAATGTAAATATGCGGCACTTAGTTACCTTTACTACGGATAGGGTGGATTGTTTCTAA 3354 0.4153 MARPSKPQESSDEPMSNGSSSSEEEQVNDQINDEEDEEELQAVARSASSDDEDAADDNSIDSDGYGDEEEQVEGVVDPEIARREKARLYEMQKLKKQKIQEMLDEQNAAIDADMNNKGKGRLKYLLQQTELFAHFAKGDQSSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLAGNTRLVMQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPILRAIKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSSETFDEWFQISGDNDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKHYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDSSIETFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKVDFKKIVSDNWIEPPKRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQVKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKSEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTSSKRGSARQADGSSSVKKRRQLTMDDYVSTVCFLALQIMNYTPSLLSWNLLVHILNLTMIFVTGKKEKINVNMRHLVTFTTDRVDCF 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0747 1117 Pfam Helicase conserved C-terminal domain 493 605 IPR001650 -
Lele24g0747 1117 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 753 843 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lele24g0747 1117 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 92 1049 - -
Lele24g0747 1117 SMART helicmild6 521 605 IPR001650 -
Lele24g0747 1117 MobiDBLite consensus disorder prediction 53 74 - -
Lele24g0747 1117 Pfam SNF2-related domain 203 470 IPR000330 GO:0005524|GO:0140658
Lele24g0747 1117 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 646 IPR001650 -
Lele24g0747 1117 ProSiteProfiles SANT domain profile. 840 892 IPR017884 -
Lele24g0747 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 405 IPR027417 -
Lele24g0747 1117 Pfam SLIDE 898 1008 IPR015195 GO:0003677|GO:0005634|GO:0006338
Lele24g0747 1117 MobiDBLite consensus disorder prediction 1013 1047 - -
Lele24g0747 1117 FunFam Chromatin-remodeling complex ATPase 191 406 - -
Lele24g0747 1117 MobiDBLite consensus disorder prediction 1013 1029 - -
Lele24g0747 1117 Gene3D - 841 895 - -
Lele24g0747 1117 SUPERFAMILY Homeodomain-like 896 1018 IPR009057 -
Lele24g0747 1117 Coils Coil 998 1025 - -
Lele24g0747 1117 CDD DEXHc_SMARCA1_SMARCA5 187 407 IPR044754 GO:0005524
Lele24g0747 1117 SMART sant 943 1004 IPR001005 -
Lele24g0747 1117 SMART sant 841 890 IPR001005 -
Lele24g0747 1117 MobiDBLite consensus disorder prediction 9 26 - -
Lele24g0747 1117 FunFam ISWI chromatin-remodeling complex ATPase CHR11 929 1032 - -
Lele24g0747 1117 Gene3D - 411 703 IPR027417 -
Lele24g0747 1117 MobiDBLite consensus disorder prediction 137 169 - -
Lele24g0747 1117 FunFam ISWI chromatin-remodeling complex ATPase CHR11 742 840 - -
Lele24g0747 1117 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 367 IPR014001 -
Lele24g0747 1117 Gene3D iswi atpase 896 928 - -
Lele24g0747 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 688 IPR027417 -
Lele24g0747 1117 SUPERFAMILY Homeodomain-like 844 894 IPR009057 -
Lele24g0747 1117 CDD SANT 844 888 IPR001005 -
Lele24g0747 1117 MobiDBLite consensus disorder prediction 1 81 - -
Lele24g0747 1117 CDD SF2_C_SNF 491 616 - -
Lele24g0747 1117 Gene3D - 929 1033 - -
Lele24g0747 1117 Gene3D - 191 406 IPR038718 -
Lele24g0747 1117 Pfam HAND 754 836 IPR015194 GO:0003677|GO:0006338|GO:0031491
Lele24g0747 1117 SMART ultradead3 186 378 IPR014001 -
Lele24g0747 1117 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 841 895 - -
Lele24g0747 1117 Gene3D ISWI, HAND domain 742 840 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lele24g0747 1117 FunFam ISWI chromatin-remodeling complex ATPase CHR11 411 703 - -
Lele24g0747 1117 MobiDBLite consensus disorder prediction 140 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0747 Lele-ChrLele24 5012427 5020149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0747 211 632 RAD5 or RAD16-like Gene Family AT1G02670 26.931 2.42e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele24g0747 SNF2_N 1.2e-71 CL0023