Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0736 ATGGAGCAGTACGGCCGGGCAAGCGGTGAGTCGCAGTCCGATCCGTCACCGGAATGGACTGGAACCGGAGGCGAAACGGGGCTTGAAGAATCTATTCGGCAATTGGGATTGGATGGTCCGGAATCGTATCCACAACGGCCCGATGAGGCTGATTGTATCTTCTATTTGAAGAATGGGTTTTGTGGGTATGGCTCGCGGTGTCGGTTCAATCATCCCCGTGACCGAGGCGCGGTTATAGGAGCTTCGATGACTGGTGCGGAGTATCCAGAGCGAGTAGGCCAGCCTATATGTCAGTATTATATGAGGACAGGATCTTGCAAATTTGGTGCTTCATGTAAGTACCACCATCCTAGGCAGGGAGGAGGCATTGCTTCTGTGTCACTTAATTATTATGGATACCCATTGCGACCGGATGAGAAAGAGTGTTCGTATTATGTGAAAACAGGACAGTGCAAATTTGGCACAACTTGTAAGTTTCATCATCCACAGCCTGCTGGTGTTCAAGTTCCTGCCCGAGTACCAGTTCCCCAAGCTTCAACTCTACCTGTACGAGTTCCTTCACCATTCTATCCAACTATGCCTCCATCTGGTCCTTCATCACAACAATATGGTGTAATGGTTGCAAGGCCACCTCTACTACCTGGGTCATTAGTCCAAAACCCTTATGGGCATATGGTAATGTCCCCTGTCCCTTTTTCAGGTTGGAATCCTTATCAGGCTCCTACAAGCCCTGTAGTTCCTGCTAGTACTCCATCTAATGTTGGCACATCACTCCTTTATGGGAAAACCCAGCTACCTTCACCGGCACCTCCCTATACTGCACCTTATCAACCAACAGGTTTCTCATTTGGTCCTTCAAGCACTAGTCAGATAGAACAACATTCATTTCCACAAAGACCTGGTCAACCAGAATGTCAACATTACATGAGAACAGGGGAGTGTAGATTTGGTCCTTCCTGTAGATATCATCATCCACCTGAATTAATTGTACCGGATGTGGTCCTTAGTCCTGTGGGTCTTCCTATGCGCCCGGGTGCACCGCCTTGCATTCATTATGCGCAGCGGGGAGTATGTAAGTTCGGTCCTGCATGCAAGTTTGATCATCCTATGGGAGCACTGACTTACAGTCCATCTGCTTCTTCCCTTGTTAATATGCCAGTTGTATCCATTCCTGTGGGTTCATCCGTCAGTACTCTTGTACCTTCGTCCTCATCATCAGGGTTGCAGCCTGAACTTAACCCTGGTTCAAGCACGGATCACGGATCATTCACAATGTCTTCGTCAATGAGCACATCTACTGGATCAGTTGGCGGGGCTTTGTCATCTAGTGGAACCGTTTCTCAGTCAAATACTCAAACATCCACCCAAAGTACTGTTCCGGTAGTGACTCCCACAATCACGACAAGGCACGCTGTCTCTCATACCTCAAGCTAA 1434 0.484 MEQYGRASGESQSDPSPEWTGTGGETGLEESIRQLGLDGPESYPQRPDEADCIFYLKNGFCGYGSRCRFNHPRDRGAVIGASMTGAEYPERVGQPICQYYMRTGSCKFGASCKYHHPRQGGGIASVSLNYYGYPLRPDEKECSYYVKTGQCKFGTTCKFHHPQPAGVQVPARVPVPQASTLPVRVPSPFYPTMPPSGPSSQQYGVMVARPPLLPGSLVQNPYGHMVMSPVPFSGWNPYQAPTSPVVPASTPSNVGTSLLYGKTQLPSPAPPYTAPYQPTGFSFGPSSTSQIEQHSFPQRPGQPECQHYMRTGECRFGPSCRYHHPPELIVPDVVLSPVGLPMRPGAPPCIHYAQRGVCKFGPACKFDHPMGALTYSPSASSLVNMPVVSIPVGSSVSTLVPSSSSSGLQPELNPGSSTDHGSFTMSSSMSTSTGSVGGALSSSGTVSQSNTQTSTQSTVPVVTPTITTRHAVSHTSS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0736 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 326 IPR000571 GO:0046872
Lele24g0736 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 346 370 IPR000571 GO:0046872
Lele24g0736 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Lele24g0736 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Lele24g0736 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Lele24g0736 477 SUPERFAMILY CCCH zinc finger 346 373 IPR036855 GO:0046872
Lele24g0736 477 SUPERFAMILY CCCH zinc finger 137 164 IPR036855 GO:0046872
Lele24g0736 477 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Lele24g0736 477 PANTHER PROTEIN PHOSPHATASE RELATED 38 403 - -
Lele24g0736 477 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Lele24g0736 477 SUPERFAMILY CCCH zinc finger 303 326 IPR036855 GO:0046872
Lele24g0736 477 MobiDBLite consensus disorder prediction 1 20 - -
Lele24g0736 477 Gene3D - 122 169 - -
Lele24g0736 477 ProSiteProfiles Zinc finger C3H1-type profile. 343 371 IPR000571 GO:0046872
Lele24g0736 477 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Lele24g0736 477 MobiDBLite consensus disorder prediction 399 477 - -
Lele24g0736 477 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Lele24g0736 477 SMART c3hfinal6 343 370 IPR000571 GO:0046872
Lele24g0736 477 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Lele24g0736 477 SMART c3hfinal6 138 163 IPR000571 GO:0046872
Lele24g0736 477 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Lele24g0736 477 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Lele24g0736 477 MobiDBLite consensus disorder prediction 1 44 - -
Lele24g0736 477 Gene3D - 288 374 - -
Lele24g0736 477 Gene3D - 44 120 - -
Lele24g0736 477 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Lele24g0736 477 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0736 Lele-ChrLele24 4931169 4935752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0736 1 436 C2H2 Transcription Factor Family AT5G18550 54.803 1.01e-146 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele24g0736 zf-CCCH 2.2e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0767 21 5025837 5030357 Lele24g0736 24 4931169 4935752 hybridization
Lele22g0749 22 4897525 4902144 Lele24g0736 24 4931169 4935752 hybridization