Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0734 ATGGATTCTACGAGGGACACGGGAGCTGTTCCAGGGACGGTGCTAATCCCGATGCGGTTTGTGTGGCCATTCGGAGGAAGAAGTGTGTATCTCAGTGGTTCTTTTACACGGTGGTCTGAGCTTCTACCAATGTCGCCCGTCGAGGGTTGCCCAACTGTATTTCAAGTTATTTATAGCTTGACCCCTGGTTACCATCAGTATAAGTTTTTTGTTGATGGAGAATGGCGACATGATGAGCATCAACCGTATGTGCCTGGAGAATATGGGATTGTTAACACTGTCTTGTTGGCTACCGATCCTAATTACATGCCTGTTATAACACCAGACCTAACTTCTGGATCAAACATGGATGTGGATAATGAGGCTTTTCGGCGTGTGGTCCGCTTGACAGACAGTACATTGACAGAAGTATTGCCGAGAATATCCGATGTTGATGTCCAGATATCCCGTCAGCGTATTACTGCATTCTTGGCCATGCACACAGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCCTTGGACATTGATCTGCCAGTGAAACAAGCGTTTCACATTTTGCATGAGCAGGGAATCCCTATGGCTCCTCTTTGGGACTTCAGCAAAGAGCAGTTTGTCGGTATTCTCAGTGCTTTGGATTTTATTTTGATTTTGAGAGAGCTTGGAAATCATGGGTCCAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCTGCTTGGAAAGAAGGAAAATCATATCTTAGTAGACAAAACAATGGACCAGGAACAGCATTTTCAAGACGTTTTGTTAGTGCTGGGCCATATGATAATTTAAAGGATATTTCCTTGAAGATCCTGCAAAATGGAGTTTCGACTGTTCCTATTGTCCATTCATCTTCTGAGGATGGTTCATTTCCACAGTTATTACATCTTGCTTCACTTTCTGGAATACTTAAATGCATTTGCAGGTATTTTAGGCATTGTACTAATACATTGCCTATTCTTCAACTACCCATTTGTGCAATTCCAGTGGGCACATGGGTGCCCAAAATTGGGGAGTCAAATCGGCAGCCCTTGGCAATGTTGAGACCAAGTTCTTCTCTTGCTTCTGCCCTAAATTTGTTAGTTCAAGCCCAAGTAAGTTCAATACCAATAGTAGACGATAATGACTCATTATTGGATATATATTGCCGGAGTGATATAACAGCTTTGGCAAAGGACAGAGCTTATACGCATATTAATCTTGATGAAATGACTGTTCATCAGGCGTTGCAATTGGGTCAGGATTCTTATCAGCCTTATGAACTGAGAAGCCAAAGATGTCAGATGTGCTTGGGATCTGATTCTCTGCATAAAGTGATGGAACGGCTGGCTAATCCAGGTGTCAGGCGGCTAGTCATCGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATTGTTTCACTGACTGACATATTCAAATTCTTGCTCGGTTAG 1458 0.4335 MDSTRDTGAVPGTVLIPMRFVWPFGGRSVYLSGSFTRWSELLPMSPVEGCPTVFQVIYSLTPGYHQYKFFVDGEWRHDEHQPYVPGEYGIVNTVLLATDPNYMPVITPDLTSGSNMDVDNEAFRRVVRLTDSTLTEVLPRISDVDVQISRQRITAFLAMHTAYELLPESGKVVALDIDLPVKQAFHILHEQGIPMAPLWDFSKEQFVGILSALDFILILRELGNHGSNLTEEELETHTISAWKEGKSYLSRQNNGPGTAFSRRFVSAGPYDNLKDISLKILQNGVSTVPIVHSSSEDGSFPQLLHLASLSGILKCICRYFRHCTNTLPILQLPICAIPVGTWVPKIGESNRQPLAMLRPSSSLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLGQDSYQPYELRSQRCQMCLGSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLTDIFKFLLG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0734 485 Gene3D - 333 485 IPR046342 -
Lele24g0734 485 ProSiteProfiles CBS domain profile. 349 406 IPR000644 -
Lele24g0734 485 Pfam Glycogen recognition site of AMP-activated protein kinase 16 98 IPR032640 -
Lele24g0734 485 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 145 483 - -
Lele24g0734 485 SMART cbs_1 263 317 IPR000644 -
Lele24g0734 485 SMART cbs_1 171 220 IPR000644 -
Lele24g0734 485 SMART cbs_1 435 484 IPR000644 -
Lele24g0734 485 SMART cbs_1 353 401 IPR000644 -
Lele24g0734 485 Gene3D Immunoglobulins 16 106 IPR013783 -
Lele24g0734 485 FunFam Sucrose nonfermenting 4-like protein 13 98 - -
Lele24g0734 485 ProSiteProfiles CBS domain profile. 431 485 IPR000644 -
Lele24g0734 485 SUPERFAMILY E set domains 16 97 IPR014756 -
Lele24g0734 485 SUPERFAMILY CBS-domain pair 152 323 IPR046342 -
Lele24g0734 485 SUPERFAMILY CBS-domain pair 351 484 IPR046342 -
Lele24g0734 485 Gene3D - 143 326 IPR046342 -
Lele24g0734 485 CDD E_set_AMPKbeta_like_N 17 95 - -
Lele24g0734 485 ProSiteProfiles CBS domain profile. 165 227 IPR000644 -
Lele24g0734 485 Pfam CBS domain 438 484 IPR000644 -
Lele24g0734 485 Pfam CBS domain 352 397 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0734 Lele-ChrLele24 4918012 4923838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0734 6 106 Protein tyrosine phosphatase (PTP) family AT3G01510 31.731 1.88e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0734 24 4918012 4923838 Lele24g0734 24 4918012 4923838 ECH
Lele21g0764 21 5011433 5017519 Lele24g0734 24 4918012 4923838 hybridization
Lele22g0747 22 4884901 4890774 Lele24g0734 24 4918012 4923838 hybridization