Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0730 ATGGTGGATAACCTGGGAGGAGGAAGTTCCTCATCATCATCAATCAATGTTGTTGACAAAATGATTGTAAAGGAACAAGACAGGTTGTTGCCAATAGCGAATGTTGGTCGGATTATGAAGCAAATCTTGCCGCAGAACGCGAAGATCTCGAAGGAATCGAAGGAGACGATGCAGGAATGCGTGTCAGAATTCATAAGCTTCGTCACCAGCGAGGCCTCCGCTAAGTGCAGAAAAGAAAGAAGGAAAACCGTTAATGGCGACGACATATGCTGGGCCATGAAAACCCTAGGGTTCGATGATTACGCAGAGCCACTTAAAAGGTACTTGCATAGATATAGAGAGCTTGAGGTAGATCAACGACCTAATAATTCTAATCACCACCACCATCAAGATACAGAATTAGGACCTTGA 411 0.4428 MVDNLGGGSSSSSSINVVDKMIVKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASAKCRKERRKTVNGDDICWAMKTLGFDDYAEPLKRYLHRYRELEVDQRPNNSNHHHHQDTELGP 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0730 136 FunFam Nuclear transcription factor Y subunit B-3 18 135 - -
Lele24g0730 136 Gene3D Histone, subunit A 18 135 IPR009072 GO:0046982
Lele24g0730 136 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 29 93 IPR003958 -
Lele24g0730 136 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Lele24g0730 136 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Lele24g0730 136 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Lele24g0730 136 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 19 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele24g0730 136 SUPERFAMILY Histone-fold 26 129 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0730 Lele-ChrLele24 4876168 4876578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0730 19 127 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.982 1.47e-58 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele24g0730 CBFD_NFYB_HMF 3.1e-26 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0740 22 4845227 4845643 Lele24g0730 24 4876168 4876578 hybridization