Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0729 ATGATTAATTCCCAACGCCTCAGAGCTTTTCTATGGCTAAAGGGAATTATTCGAATTACTTCTCCGACCTCACAATGGTTTCGACTCTTGCAACCCTACCATTCGCCCACATTCTCTGTCAAATTCAGCACAATTGCTTCTTCAGGTAATCATTCGTTTACCGTATCATACCTCATTAACAATTTAGGGTTCTCCCAAGAAGCCGCTTTACATGTCTCCAAGACCGTTCGATTTGAGACCGGTCAAAAGCCTGATGCAGCTGTCAGCTTCTTCAGAAGCCACGGTTTCTCTCAGTCTCAAATCAATGATCTTGTTAAAAGGTTACCGGGGTTTCTTATTTGCAATCCCCACAGAAGTATTTTGCCCAAGTTTGAATTTCTCCTCTCAAAAGGTGCGTCTACATCCGACCTTAACTTCATGGTGCTTAGGACCCCTAGATTCCTTAGGAGAAGCTTAGAGAATCACATAATCCCATCGTATGAAATGCTAAGAGGGTTTCTTCACAGTGATAAAGCCACCATTTCATGTATAAAAGGCTATCCAGATATGCTTTATGACAATCGAGTAATAGGAAGTATAAACACGTTGCTTAAGCATGGAGTGTCAAGGACGAACATTGCTCTCTTACTCACAAGGAGGCCTCGTGTACTTCACTCCACTGATTTCCTTACAAAGGTAGTAGAGGAAGTTAAGGGTTTTGGATTTAATCCTTTGACTACGACATTTACTATTGCATTGATAGCCAAAGCGGCTGTGAGTAACTCCCGCTGGGCAGCCAAAGTTGATGTCTACAAGAGATGGGGATGGTCGGAAGCAGCATGGTCAGAAGCATTTAGGAAACAACCGCACATCATGCTGGCATCCAACGATAAAATTGATGCAGTTATGAGTTTTTGGAGTAACCATTTGGGTTGGAATCCGTTGGCCCTTGTCAAAGGACCAAATTTGTTTGGACATAGCTTGAAGAAAAGGATTATCCCAAGGGCTGCAGTTTTAGATTATCTTCAGTCAAAAGGGTTGGTAAAAAATAATGCGAGCATAATTGCGCCATTTGAGATTTCTGAAAAGCGGTTCCTGGAAAGATTTGTGAAACGTTATGAGGAGCATAGTCATCATCTGTTGAAGCTATGTGAAAAAAATTTGAAGAATGATGGAATGTCATTTATCAGTAGGTGCTTTGGTTGCAGAATACTTTTGGTCATTTTAATTGCTGTGCAGAATTTGAAATGGTTCTTGAACCATTATGGCTCAGCTCTAACTTATTCTTCGCCTAATCAAGCTGAGCTTTCAAATGGAGTTATGGAACATCATAAATCTAGGCTTACTGATATTGTTGAAGAGCAAGTAGTTGCTATATTATCTTTTCCAAACTTTTTTAAAGTTGTTGGAATTAACTTGTATTCTTCATGGTTCTCCCAAGAAGCTGCTTTAAATGTCTCCAAGACCGTTCAATTTGAGACCGCACAAAAGTCAGATGCAGCTGTCAGCTTCTTCAGAAGCCACGGTTTCTCTGAGTCTCAAATCAACGATCTTTTTAAAAGGTTACCGAGGCTTCTTATGTGCGATCCCCACAGAAGTATTTTGCCCAAGTTTGAATTTCTCCTCCCAAAAGGTGCGACTACCTCCGACCTTAACTTCATGGACGAACGTTACTCTCTTACTCAGAAGAAGGCTAGTGTACTGCACTCCCCTGATTTCCCTACAAAGGTGGTAGAGGAAGTTAAGTGTTTGGGATTTAATCCTTTGAATATAACATTTAATGTTGCATTGATAGCCAAAACGGTTTTGAGCAAGTCCTGCTGGGAAGCCAAAGTTGATGTCTACAAGAGATGGGGATGGTCAGAAGAAGCATGGTCAGAAGCATTTAGGAAGCAACCGCACATTATGTTAGCATCCGAGGATAAAATTGATGCAATTATGAGCTTCTGGAGTAACCATTTGGGTTGGAATCCTTTAGTCCTTGGGAAAGGACCAAATGTATTTGAATATAGCTTGAAAAGAAGGATTATCCCAAGGGGTTCAGTTTTACATTATCTTCAGTCAAAAGGGTTGATAAAAAAGAATGCTAGCTTAGTTGCGCCATTTGGTATACCTGAAAAGGGGTTCCTGGAAAGATATGTGAAACGTTTGGAGGAGCATAATCATCATCTATCGAAGCTATATGAAGAAAATTTGAAGAATGATGGAATGTCGTGCATGAAATTTTGA 2208 0.4049 MINSQRLRAFLWLKGIIRITSPTSQWFRLLQPYHSPTFSVKFSTIASSGNHSFTVSYLINNLGFSQEAALHVSKTVRFETGQKPDAAVSFFRSHGFSQSQINDLVKRLPGFLICNPHRSILPKFEFLLSKGASTSDLNFMVLRTPRFLRRSLENHIIPSYEMLRGFLHSDKATISCIKGYPDMLYDNRVIGSINTLLKHGVSRTNIALLLTRRPRVLHSTDFLTKVVEEVKGFGFNPLTTTFTIALIAKAAVSNSRWAAKVDVYKRWGWSEAAWSEAFRKQPHIMLASNDKIDAVMSFWSNHLGWNPLALVKGPNLFGHSLKKRIIPRAAVLDYLQSKGLVKNNASIIAPFEISEKRFLERFVKRYEEHSHHLLKLCEKNLKNDGMSFISRCFGCRILLVILIAVQNLKWFLNHYGSALTYSSPNQAELSNGVMEHHKSRLTDIVEEQVVAILSFPNFFKVVGINLYSSWFSQEAALNVSKTVQFETAQKSDAAVSFFRSHGFSESQINDLFKRLPRLLMCDPHRSILPKFEFLLPKGATTSDLNFMDERYSLTQKKASVLHSPDFPTKVVEEVKCLGFNPLNITFNVALIAKTVLSKSCWEAKVDVYKRWGWSEEAWSEAFRKQPHIMLASEDKIDAIMSFWSNHLGWNPLVLGKGPNVFEYSLKRRIIPRGSVLHYLQSKGLIKKNASLVAPFGIPEKGFLERYVKRLEEHNHHLSKLYEENLKNDGMSCMKF 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0729 735 Gene3D Transcription termination factor 3, mitochondrial 459 719 IPR038538 -
Lele24g0729 735 Gene3D Transcription termination factor 3, mitochondrial 50 186 IPR038538 -
Lele24g0729 735 Gene3D Transcription termination factor 3, mitochondrial 187 376 IPR038538 -
Lele24g0729 735 PANTHER CGI-12 PROTEIN-RELATED 469 544 IPR003690 GO:0003690|GO:0006355
Lele24g0729 735 Pfam mTERF 596 699 IPR003690 GO:0003690|GO:0006355
Lele24g0729 735 Pfam mTERF 187 359 IPR003690 GO:0003690|GO:0006355
Lele24g0729 735 Pfam mTERF 88 298 IPR003690 GO:0003690|GO:0006355
Lele24g0729 735 Pfam mTERF 495 550 IPR003690 GO:0003690|GO:0006355
Lele24g0729 735 FunFam Mitochondrial transcription termination factor-like 152 370 - -
Lele24g0729 735 SMART mt_12 509 540 IPR003690 GO:0003690|GO:0006355
Lele24g0729 735 SMART mt_12 207 236 IPR003690 GO:0003690|GO:0006355
Lele24g0729 735 SMART mt_12 651 685 IPR003690 GO:0003690|GO:0006355
Lele24g0729 735 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Lele24g0729 735 SMART mt_12 619 650 IPR003690 GO:0003690|GO:0006355
Lele24g0729 735 SMART mt_12 138 169 IPR003690 GO:0003690|GO:0006355
Lele24g0729 735 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Lele24g0729 735 SMART mt_12 102 133 IPR003690 GO:0003690|GO:0006355
Lele24g0729 735 Coils Coil 703 723 - -
Lele24g0729 735 FunFam Mitochondrial transcription termination factor-like 487 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0729 Lele-ChrLele24 4867258 4871921 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lele24g0729 mTERF 5.1e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0738 22 4833533 4834708 Lele24g0729 24 4867258 4871921 hybridization