Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0667 ATGAATCTAAGTGACGCCAAGGGATCCATGTCAACGGCAAGCTCTAGTACCGTCGACCAGTTCCCGGCGGGCTTGCGGGTACTGGTGGTCGACGATGATCCCACTTGCCTTATGATCCTTGAGAAGATGCTTCGCACTTGCCTCTACGAAGTAACAAAATGCAATCGAGCTGAAGTTGCATTGTCTCTTCTGAGAGAGAACAAAAAGGGGTTCGACATAGTTATAAGCGATGTGCATATGCCAGACATGGATGGCTTCAAGCTTTTAGAACACATAGGGTTGGAAATGGACCTTCCAGTTATTATGATGTCAGCAGATGATGGGAAAAATGTTGTTATGAAAGGTGTAACACATGGTGCTTGTGATTATCTAATAAAACCTGTGCGTATCGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAAAGAAAGAACGAGTGGAAGGATTTGGAGCAATCCTATAGCACAGAAGAAGGAGATCGGCAGCAAAAGGCATCGGATGAAGCTGATTACTCATCGTCTGCAAATGAAGGAAATTGGAGAAATGCTAAGAAGAAGAGAGATGAGGAGGAAGAAGCAGAGGAGAAGGATGATACTTCTACATTAAAGAAGCCGCGCGTTGTTTGGTCCGTTGAGCTCCACCAACAGTTTGTGGCTGCCGTGAATCAGCTGGGAATTGACAAGGCCGTTCCCAAAAGAATTCTGGAATTGATGAATGTTCCTGGGCTTACCAGAGAAAATGTTGCTAGCCATCTCCAGAAATACCGTCTGTATCTAAGAAGACTCAGTGGCGTTTCTCAGCACCAGAGTAACCTGAACAACTCTTTCATCAGTCCACAAGAAGCAACCTTTGGAACAATGTCAGCGTTTAATGGAATTGATCTTCAAGCTCTTGCAGCTGCCGGCCAGCTTCCGGCACAAAGTCTGGCAGCTCTTCAAGCAGCAGGACTTGGTAGATCAACTGCTAAAGTTGGAGTATCTGTGCCCCTTGTCGATGAAAGGAACCTTTTCAGTTTTGAGAACCCCAGATTAAGATATGGAGATGGGCAACAACAGTACTTGAGCAGTTCTAAATCAATAAACTTGCTTCATGGAATCCCTACCAACATGGAGCCAAGGCAGCTCGCCAATTTGCACCAATCAACACAATCCCTCGGCAGCATGAATGTGCGAGTCGATGCATCGGCTGCACAGAGCAACTCTTTATTGATGCCAATTGCTCAATCTCGACCAAGAGGTCCAATGCTCAATGAAAACACTGCTTCGCATGTACCGAGACTTCCACTATCCGTTGGGCAGCCTACTGTACTAAATGGAATTTCTAATGCTGCTGCTCTGGGAAGAAATGGGATTGCTGGTAATAGCAGAGGAGCTTCCTATAATCCAATTCCACAAACTTCTTCAATGCCAAGTTTTCCCACAAACCAAACTACAGAAATTTCTGCCAGTAGTTTCCCACTTGGAAGCACACCAGGCATATCTAGCATCCCACCGAAAGGCGCATTTCAAGAGGAAGATACTTCAGGAATTAAAGGATCTGGGGGATTTGTGCCTAGTTATGATATTTTCGACGAACTGCGCCAGCATAAGTCCCATGATTGGGGACAAAATGTGGGCCTCACATACGATACCTCTCAGCGTGCGAATCCTTTACCCGGTAACATCGATGTCTTTCCATCGGTTATAGTACATCAGAGCTTTTCTTCCTCCACCCAACAACAGACTGGACAGAACGGAGATTCAACGCTGATAGGAAAATCCATGTACTCCCAAGGAAAAGGTTTGGAACAAGGAAATCTCCCAAATATTGATCAAAACCTCCATAGTCTTGTTGAAAATCCTGCAAGGGTTAAGACTGAAATAATTTCTGATGCATACTCTCATTCGAACTTCTTCCCCGAGCATTATGAGCAGGATGATCTCATGAGTGCACTTCTCAAACAGCAAGAAGGCATTGAAGCAGCTGAGAATGAATTTGACTTCGATGGATATTCCTTGGACAACATTCCTGTCTAG 2019 0.4507 MNLSDAKGSMSTASSSTVDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEVALSLLRENKKGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSYSTEEGDRQQKASDEADYSSSANEGNWRNAKKKRDEEEEAEEKDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNLNNSFISPQEATFGTMSAFNGIDLQALAAAGQLPAQSLAALQAAGLGRSTAKVGVSVPLVDERNLFSFENPRLRYGDGQQQYLSSSKSINLLHGIPTNMEPRQLANLHQSTQSLGSMNVRVDASAAQSNSLLMPIAQSRPRGPMLNENTASHVPRLPLSVGQPTVLNGISNAAALGRNGIAGNSRGASYNPIPQTSSMPSFPTNQTTEISASSFPLGSTPGISSIPPKGAFQEEDTSGIKGSGGFVPSYDIFDELRQHKSHDWGQNVGLTYDTSQRANPLPGNIDVFPSVIVHQSFSSSTQQQTGQNGDSTLIGKSMYSQGKGLEQGNLPNIDQNLHSLVENPARVKTEIISDAYSHSNFFPEHYEQDDLMSALLKQQEGIEAAENEFDFDGYSLDNIPV 672
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0667 672 SMART REC_2 25 137 IPR001789 GO:0000160
Lele24g0667 672 MobiDBLite consensus disorder prediction 181 202 - -
Lele24g0667 672 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 370 IPR045279 GO:0009736
Lele24g0667 672 Gene3D - 25 163 - -
Lele24g0667 672 MobiDBLite consensus disorder prediction 458 514 - -
Lele24g0667 672 MobiDBLite consensus disorder prediction 153 202 - -
Lele24g0667 672 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 261 IPR017930 -
Lele24g0667 672 CDD REC_typeB_ARR-like 27 141 - -
Lele24g0667 672 SUPERFAMILY CheY-like 24 149 IPR011006 -
Lele24g0667 672 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Lele24g0667 672 FunFam Two-component response regulator 25 162 - -
Lele24g0667 672 FunFam Two-component response regulator 201 264 - -
Lele24g0667 672 ProSiteProfiles Response regulatory domain profile. 26 141 IPR001789 GO:0000160
Lele24g0667 672 PIRSF RR_ARR_type-B 4 663 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele24g0667 672 MobiDBLite consensus disorder prediction 458 492 - -
Lele24g0667 672 MobiDBLite consensus disorder prediction 153 168 - -
Lele24g0667 672 Pfam Myb-like DNA-binding domain 207 257 IPR001005 -
Lele24g0667 672 SUPERFAMILY Homeodomain-like 202 262 IPR009057 -
Lele24g0667 672 Pfam Response regulator receiver domain 27 135 IPR001789 GO:0000160
Lele24g0667 672 Gene3D - 202 264 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele24g0667 Lele-ChrLele24 4438683 4441625 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0667 59 672 Response Regulator Gene Family AT3G16857 50.383 0.0 534
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele24g0667 Response_reg 9.8e-23 CL0304
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0667 24 4438683 4441625 Lele24g0667 24 4438683 4441625 ECH
Lele21g0682 21 4491033 4494005 Lele24g0667 24 4438683 4441625 hybridization
Lele22g0670 22 4404944 4407942 Lele24g0667 24 4438683 4441625 hybridization