Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0664 ATGTTGGATCCGAGCGGGAAAGGATCGGAAGCCGAGGAGGCTAATGCGAGGAATCCAAATGGGGGTTCATCGGAAGAGAGCCCAACAATGAGCGAGCAGAAGAAGACGTGCGCCGGTTGCGGCACCAGCAAGACCCCTCTCTGGCGAGGTGGTCCAGCTGGGCCAAAGTCACTTTGCAACGCTTGTGGTATCAAAAGCAGGAAGAAGAAGAGAGCGATTCTGGGTTTGAACAAGGGAAGCATGGAAGAGAAGAAAGGGAAGAGAAACAACAACAACAACGGAAGCAGCAAGATTGGGGACAGTTTGAAGCAGAGGTTAATGGCTTTGGGAAGCGAGGTTTTGATGCAGAGGAAGAATTTGGGAGAGGAAGAACAAGCAGCAGTTCTATTGATGGCTCTCTCATATGGATCCGTTTACGCTTAG 423 0.5083 MLDPSGKGSEAEEANARNPNGGSSEESPTMSEQKKTCAGCGTSKTPLWRGGPAGPKSLCNACGIKSRKKKRAILGLNKGSMEEKKGKRNNNNNGSSKIGDSLKQRLMALGSEVLMQRKNLGEEEQAAVLLMALSYGSVYA 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0664 140 Pfam GATA zinc finger 37 71 IPR000679 GO:0006355|GO:0043565
Lele24g0664 140 PANTHER OS01G0976800 PROTEIN 9 140 - -
Lele24g0664 140 MobiDBLite consensus disorder prediction 74 99 - -
Lele24g0664 140 MobiDBLite consensus disorder prediction 16 40 - -
Lele24g0664 140 SMART GATA_3 31 86 IPR000679 GO:0006355|GO:0043565
Lele24g0664 140 CDD ZnF_GATA 36 71 IPR000679 GO:0006355|GO:0043565
Lele24g0664 140 MobiDBLite consensus disorder prediction 75 90 - -
Lele24g0664 140 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 33 71 - -
Lele24g0664 140 MobiDBLite consensus disorder prediction 1 54 - -
Lele24g0664 140 Gene3D - 31 98 IPR013088 GO:0006355|GO:0008270
Lele24g0664 140 ProSiteProfiles GATA-type zinc finger domain profile. 31 67 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0664 Lele-ChrLele24 4426809 4427421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0664 1 140 C2C2-Gata Transcription Factor Family AT3G06740 55.484 6.83e-47 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele24g0664 GATA 1.3e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0664 24 4426809 4427421 Lele24g0664 24 4426809 4427421 ECH
Lele21g0680 21 4476709 4477324 Lele24g0664 24 4426809 4427421 hybridization