Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0657 ATGTCAGCACTTGTTGAAGATGCAATAATAAGATCCAAGAAAGTATCAACGGGAAGAGCTCCTTGCTGTGATAAAGTGGGTCTGAAGAAAGGAAGATGGACTTCTGAGGAAGATAAACTCTTGAACGACTATATTCAACACCACGGCGAAGGCTCTTGGAGATCCTTGCCCAAAAATGCAGGGTTACTGAGGTGTGGGAAGAGTTGCAGACTGAGATGGATAAACTATTTGAGAGAAGATGTGAAGAGAGGAAACATTACTGCTCAGGAAGAGGCCATGATTGTGAAGCTTCATGGTGCCATCGGTAATAGGTGGTCTGTAATAGCGAGGCATCTACCAGGAAGAACAGACAATGAGATAAAGAATTATTGGAACTCTCATTTGAGAAGAAAAATTTACTGTTTCATGAAGCCCTCAAACTCCGACGACACTCTCCCACCGATTGACATTGCTGCTCTGAACGCAGCTGTTTCATCCAAACGAGGAAGAGGTGGTCAAGGAAGACCAACTCAAGTACCCATGCAAGAGGAGGACAAGAACAATATCCCTTCAAACCAATACTCGCCCTTTGATAGGAATGCTCACGATCTGTTTGACAAAATGCATCAGAGAAAAGCAAACCCAGATGAAGCTGAGACAATTTCAATGGTCGGTTCTAGATCTTGGAGCCAGAATCAACAAGAAGAGACCGTTGATGGCATTGATTTGGATGCATATTGCGAGATGAGTAGTGATGATGCAAATGGCAAAGCAGCAGCATTTTGCCCCAACATGGATGGAGAAGGTGAGGCCTTCGGGTCATTTCAATGGCTAGATGATGAAGTAATGAAACTTAATTACATGTTTGAAAGTGGGATTCTTGTGAACCCAACCAATAGTGGAAATAACAGTATGGGAAGAGAATATGGCTATGGAGTGGTGGGTGGAGGTAACAAGGAGATGAATATTCCAACAAGCGAGGAAAGTAAAAGTGGTGGTTGGAGCTCAGTATCAAATTACACAGAGAGTTCATCGTCAGGGAATTCTGTTTACGATTATCAGTGGGTTGATTGGGATATTTCAGCTAGCGCTCAGTCCCATAATCAATGCAACCTCCAGTACTCTGAAGAAAGCCAGATGATGACTTGTTTGTGGGATGCCACTGCTAATGGAGAAGTAAATAACTTCCACTGA 1173 0.4322 MSALVEDAIIRSKKVSTGRAPCCDKVGLKKGRWTSEEDKLLNDYIQHHGEGSWRSLPKNAGLLRCGKSCRLRWINYLREDVKRGNITAQEEAMIVKLHGAIGNRWSVIARHLPGRTDNEIKNYWNSHLRRKIYCFMKPSNSDDTLPPIDIAALNAAVSSKRGRGGQGRPTQVPMQEEDKNNIPSNQYSPFDRNAHDLFDKMHQRKANPDEAETISMVGSRSWSQNQQEETVDGIDLDAYCEMSSDDANGKAAAFCPNMDGEGEAFGSFQWLDDEVMKLNYMFESGILVNPTNSGNNSMGREYGYGVVGGGNKEMNIPTSEESKSGGWSSVSNYTESSSSGNSVYDYQWVDWDISASAQSHNQCNLQYSEESQMMTCLWDATANGEVNNFH 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0657 390 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Lele24g0657 390 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Lele24g0657 390 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Lele24g0657 390 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Lele24g0657 390 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 18 225 - -
Lele24g0657 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Lele24g0657 390 SUPERFAMILY Homeodomain-like 27 124 IPR009057 -
Lele24g0657 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 77 IPR017930 -
Lele24g0657 390 CDD SANT 87 128 IPR001005 -
Lele24g0657 390 Gene3D - 87 132 - -
Lele24g0657 390 Gene3D - 29 82 - -
Lele24g0657 390 MobiDBLite consensus disorder prediction 173 188 - -
Lele24g0657 390 SMART sant 29 79 IPR001005 -
Lele24g0657 390 SMART sant 82 130 IPR001005 -
Lele24g0657 390 CDD SANT 32 77 IPR001005 -
Lele24g0657 390 MobiDBLite consensus disorder prediction 159 188 - -
Lele24g0657 390 FunFam Myb transcription factor 27 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0657 Lele-ChrLele24 4390722 4395261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0657 18 162 MYB Transcription Factor Family AT5G49330 69.655 2.08e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele24g0657 Myb_DNA-binding 4.1e-13 CL0123