Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0648 ATGGCAAATAACTTAACGGGGCAGCTCGTTGGTTCAGAGATACATGGATTCCATACATTGCAAGGACTCGATGTTAGGAACACTATGGAGGAAGCAAAAAGCAGATGGCTTCGCCCTAACGAGATTCATGCTATACTTAGTAATTACAAGTATTTCACCATCCATGTAAAGCCAGTGCGCATGCCTCCAAGTGGTACCATAGTATTATTTGACCGCAAGATGCTTAGGAACTTTCGAAAAGATGGATACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTGAAGGAAGCTCATGAACACTTAAAAGTTGGTGATGAAGAAAGGATCCATGTATACTATGCACATGGCCAAGATAACCCAGGATTAGTGCGTAGATGTTATTGGCTTCTTGACAAGAGTCTGGAACACATAGTTCTTGTTCACTATCGTGAAACACAAGAGTTGCAGGGCTCTCCAACTACACCTGTATGTTCAAATTCTACTTCGGGCTCTGATCCAACTGCACAGTTGATTTTATCAGAAGAATTGGATTCTGGGACGAACAATCCATTTGCTGGGGAAGTTAATGACAATTTGAAACTCAATAGTCATGAACTGAGGCTTCTTGAGCTCAACACACTTGAATGGGATGATCTAGTGGTTACAAATGACCTCAACAATTCTACCACATCTATGGGAGCCAAGGTTCCATATTTTGATCAACAAAATCAGTCTTTGCTGAGTGGCAATTTGAGCAATGTTACTAGCAGTCTGTCTGCTGAAATTCCTTCTTTTGATAACATAACACAACCTATTACTGGGAGCAACAATGCACCTTATGGTTTCCCAGAATCTGTAGATCTTCAGACAACAGATAATCAAGCAAATCCAAATGCACAAAAGGGATATCCTGTCGCTGTGGGTGGTGTTGATTCCTTGGACACTTTGGTCAATGATAGTTTGCAGAGTCAGGACAGCTTTGGAAGGTGGATCAATAACATGATTTCTGATTCACAATGTTCTGTAGATGAAACAGCTCTTGTATCGCCTGTTATATCTATTCAAGAACCATATTCTTCTCTGGTAGAGAATTATCAGCAACCTTCTCTGCCCGAACAGCTTTTTAATATCACTGACGTCTCACCTTCATGGGCATCTTCCACTGAGAAGACCAAGATCCTGGTCACTGGAATTTTTCACGATAACTATCTACACCTTGCAAAGTCTAATCTATGTTGTGTCTGCGGTGACGTAAGTGTTCAAGCTGATATTGTTCAAGTTGGGGTCTACCGATGCTGGGTACCATCACATTCACCAGGATTTGTAAATCTCTATATGAGCCTTGATGGCCATAAACCCATAAGCCAGGTTGTCAATTTTGAGTATCGTACTCCAATTTTGCATGACCCCGCAGCCTCTATGGAAGAGAGGTATAACTGGGCTGAATTTCGACTTCAAATGAGGCTTGCTTATTTGCTCTTTGGTAGTCACAAGAGTCTTGATATTATCTCTAGTAAAGTATCACCTAAAGCAATAAGGGAGGCTAAAAACTTTGCTTCAAAGACCTCATTGGTTTCCAGAAGTTGGCAATACTTGGTTAAGTCAACTGAAGAAAACAAAACTCCATTTCCTCAAGCAAAAGACGCACTGTTTGAAACGTCCTTGAAAAACGGATTAAAGGAATGGCTGTTAGAAAGAATTCTCTTAGGCCGTAAGACTACTGAATATGATTCCCAAGGTCAAGGTGTAATCCATTTGTGCGCAATTTTGGGATATACTTGGGCTGTTTCATTATTTTCAGGATCGGGCTTGTCAATAGATTTTCGTGATAAATTTGGGTGGACAGCGCTTCATTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGCAGTGCTGTTGTCTGCTGGGGCAAAGCCTAACTTAATCACAGATCCTACTCCACAAAATCCTGGTGGATGTACTGTTGCTGATCTTGCTTTTATGAAGGGTTATGAAGGCTTAGCAGCTTATATTTCAGAAAAATCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATTAGTGGCAAACTGGAATCAAGCACAAATGATCCTGTAAATTATGACAATCTCACTGAGGACCAACTATACCTAAAGGATACATTGGCAGCTTACCGAACAACTGCTGAGGCGGCAGCACGAATACAGGCTGCATTTAGGGAGCACTCGCTAAAAGTAAGAGCAAACGCAGTTCAGATTTTAAATCCAGAGGATGAGGCCCGTATGATTGTTGCAGCAATGAAGATTCAACATGCCTATCGCAATTATAACACAAAGAGGATGATGGCAGCTGCAGCTCGCATCCAGCATAGGTTCCGTACATGGAAATTTCGTAGAGAATTTGTCAACATGCGACGTCAGGCTATCAAAATCCAAGCTGCTTTCCGGGGCTACCAAATGAGGAAGCAGTATTGTAAAATTCTCTGGTCTGTTGGAGTACTTGAAAAAGCAATCCTTCGATGGCGATTGAAGAGAAAAGGCTTCCGTGGACTTCAGGTTAATCCTGTCCAACAAGAGCAAGAACCAAAGCAGGAAAGTGACACAGAGGAGGACTTCTTCAGGACTGGTCGGAAACAAGCCGAAGAACGTGTAGAGAGATCTGTGGTGCGTGTTCAGGCCATGTTCCGTTCAAAGAAAGCACAAGAGGAGTATAGGAGGATGAAGCTGGCTCACAATCAGGCAAAGCTGGAACTTGAATATGAAGAGCTACTCAATTCAGAGGTTGATATTCTATAA 2760 0.4188 MANNLTGQLVGSEIHGFHTLQGLDVRNTMEEAKSRWLRPNEIHAILSNYKYFTIHVKPVRMPPSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTVKEAHEHLKVGDEERIHVYYAHGQDNPGLVRRCYWLLDKSLEHIVLVHYRETQELQGSPTTPVCSNSTSGSDPTAQLILSEELDSGTNNPFAGEVNDNLKLNSHELRLLELNTLEWDDLVVTNDLNNSTTSMGAKVPYFDQQNQSLLSGNLSNVTSSLSAEIPSFDNITQPITGSNNAPYGFPESVDLQTTDNQANPNAQKGYPVAVGGVDSLDTLVNDSLQSQDSFGRWINNMISDSQCSVDETALVSPVISIQEPYSSLVENYQQPSLPEQLFNITDVSPSWASSTEKTKILVTGIFHDNYLHLAKSNLCCVCGDVSVQADIVQVGVYRCWVPSHSPGFVNLYMSLDGHKPISQVVNFEYRTPILHDPAASMEERYNWAEFRLQMRLAYLLFGSHKSLDIISSKVSPKAIREAKNFASKTSLVSRSWQYLVKSTEENKTPFPQAKDALFETSLKNGLKEWLLERILLGRKTTEYDSQGQGVIHLCAILGYTWAVSLFSGSGLSIDFRDKFGWTALHWAAYYGREKMVAVLLSAGAKPNLITDPTPQNPGGCTVADLAFMKGYEGLAAYISEKSLVEQFNDMSLAGNISGKLESSTNDPVNYDNLTEDQLYLKDTLAAYRTTAEAAARIQAAFREHSLKVRANAVQILNPEDEARMIVAAMKIQHAYRNYNTKRMMAAAARIQHRFRTWKFRREFVNMRRQAIKIQAAFRGYQMRKQYCKILWSVGVLEKAILRWRLKRKGFRGLQVNPVQQEQEPKQESDTEEDFFRTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAHNQAKLELEYEELLNSEVDIL 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0648 919 SMART iq_5 871 893 IPR000048 GO:0005515
Lele24g0648 919 SMART iq_5 768 790 IPR000048 GO:0005515
Lele24g0648 919 SMART iq_5 791 813 IPR000048 GO:0005515
Lele24g0648 919 SMART iq_5 715 737 IPR000048 GO:0005515
Lele24g0648 919 SUPERFAMILY E set domains 369 456 IPR014756 -
Lele24g0648 919 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Lele24g0648 919 SMART CG_1_2 29 146 IPR005559 GO:0003677
Lele24g0648 919 SMART ANK_2a 644 675 IPR002110 GO:0005515
Lele24g0648 919 SMART ANK_2a 605 634 IPR002110 GO:0005515
Lele24g0648 919 Gene3D - 767 816 - -
Lele24g0648 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 714 819 IPR027417 -
Lele24g0648 919 Pfam IQ calmodulin-binding motif 794 812 IPR000048 GO:0005515
Lele24g0648 919 Pfam Ankyrin repeats (3 copies) 557 634 IPR002110 GO:0005515
Lele24g0648 919 MobiDBLite consensus disorder prediction 842 862 - -
Lele24g0648 919 SUPERFAMILY Ankyrin repeat 549 666 IPR036770 -
Lele24g0648 919 Gene3D Immunoglobulins 364 459 IPR013783 -
Lele24g0648 919 Coils Coil 885 905 - -
Lele24g0648 919 ProSiteProfiles IQ motif profile. 769 798 IPR000048 GO:0005515
Lele24g0648 919 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 901 - -
Lele24g0648 919 FunFam Calmodulin-binding transcription activator 5 364 460 - -
Lele24g0648 919 ProSiteProfiles IQ motif profile. 792 816 IPR000048 GO:0005515
Lele24g0648 919 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Lele24g0648 919 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Lele24g0648 919 Gene3D - 537 673 IPR036770 -
Lele24g0648 919 ProSiteProfiles Ankyrin repeat region circular profile. 605 633 - -
Lele24g0648 919 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Lele24g0648 919 FunFam calmodulin-binding transcription activator 5 535 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0648 Lele-ChrLele24 4322297 4329477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0648 29 905 CAMTA Transcription Factor Family AT3G16940 57.110 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lele24g0648 CG-1 9.2e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0648 24 4322297 4329477 Lele24g0648 24 4322297 4329477 ECH
Lele21g0660 21 4371608 4378669 Lele24g0648 24 4322297 4329477 hybridization
Lele22g0651 22 4287178 4294528 Lele24g0648 24 4322297 4329477 hybridization