Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0573 ATGGCAACAGCTGAGGCATCTGCTGCTTCTCTTGGTCCCCGATATGCACCTGATGACCCTACTCTTCCAAAACCTTGGAAGGGATTGATTGATGGAAGTACGGGTCTATTATACTATTGGAACCCTGAAACCAACATCACCCAGTATGAAAAACCTACAGCTCCGCCACCAACCATGCCTACTGGGCCACCTCCTGCAGTTTCTATGCCCAAGTTGGCTCCCATACCAGTGGCTCATTCAGTGCAACCTGGTGGGGTGGTGGCACAGCATGGGCAGCACTTACTACAAACCTCTCACCAACAGGGACAGCAAATGAACCACCTATCCCAACAGCATAGTCCCCAGGTAGCACCGGTCGCTCAGCAGCAGCCTGCTCAAGCAGCACAAGCTGGACAACAACAGAGTTCACAGTCACTGCAATCTATGCCACAACCAGGTTTGCAACAAGTCAGGCAGCAGCAGCAGATGTTGCAGCCTATGAGTCAGCAAATTCCACCACAGCAAATGCATCATCAGATTCCACAACAAGCCATCCAGTCACAACCTTTTGGGCAAGGAGCCACCCAGGATCATGGTTCATATATGGGACAGCCACAAGCTCATCAATTCAGTCACCAGATCCTACATTACATGCCATATTCACAAAGCATGCACTCAAATGGGCAGCAAAGTTCCCAGCCAATCCAGCATAACATGCATGGTCAGCCATTGGAAAATCAACAGGAGTTTAAAGCAGCATTCCCAAAGGTAGAGGATGTAGATTTTAAAAATGGAAGTCAAGTTGGACTTTCACCATCCCAGTATCACCAAAATAATGCCTTGCCTTTGCAAGGCAATCAGAACGTTCCTGCTGGAATTTCCCCTGTCCAGGTGCCACGTGTTGGTGTTAATGTTGGCCAAGCACAACCATTTGGTGGTATGCAACAGCCTTCTGCAGCAATGCAATCGCAGCAGGGTAGTGCAGATTTAGTTTATCAACATGGTCATAACTTTCAAAAACAGATGGGCCCAGGAATGATGCATGGTCAGCCATCTAATGTCCATCCTGTTGACCAAAAGATGGGACACGAGGACAACTTACGTGGTAGAGCTGTTAATGAATATTACTACAACTCTGGCAAGGAGATGCCACCAATGGGTTCTCAGCAGCCAAATATTGCACCAATACCCATTTCAAGAAATCAGCAGGTTTTTTCAAGTGATATGAGGATTGGCAGTTCCCCTTTTCAAAATGCAATGCCTGGTGGGAATGGGTTAAATGGTGTCCCAGGGCATAGTATGCATAACATGTTTAATCCTCCGATTGCAGTTGCTGGTAACTCTTTGACTAGGTCTCATGTCACTGATCTGTCACCTGCTGAAATTTACTGTCAGCAACATGAAGTTATAGCAACGGGCGACAATGTTCCTCCCCCCTTCATGACATTTGATGCTGCTGGGTTTCCTCCAGAGATTTTGAGAGAGATCTATTCTGCGGGCTTCTCAACTCCAACACCTATTCAAGCTCAAACGTGGCCTGTTGCCCTACAGGGTAGGGACATAGTGGCTATTGCCAAAACAGGCTCTGGAAAAACATTGGGTTATTTAATCCCAGCATTTATGATTCTTAGACAGAGGCGTAACAATCCCCTGAATGGCCCCACAGTGTTGGTATTGGCTCCAACACGTGAACTTGCAACACAGATTCAAGATGAAGCCATAAAATTTGGTCGATCTTCACGGGTCTCCTGCACGTGCTTGTATGGTGGGGCACCAAAAGCTCTTCAGCTGAAAGAGTTAGACCGTGGAGCAGACATTGTTGTTGCTACACCTGGCCGGCTCAATGACATACTTGAAATGAAGAAAATCGACTTTGGGCAAGTCTCACTTCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATACCGCCACGTAGGCAAACTCTTATGTACACAGCAACATGGCCAAAGGAAGTACGAAAAATTGCTGGTGATCTCCTCGTTAATCCTGTCCAAGTTAATATTGGAAATGTTGACGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTTCCACAAATGGAGAAACAAAGGCGTTTAGAGCAGATCATCAGATCCCAAGAACGAGGTTCTAAGGTCATAATATTTTGCTCCACAAAGAGGTTATGTGATCAACTTGCCCGTAGCATTGGCCGTAATTTTGGTGCAGCTGCAATCCATGGGGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTGAATCAGTTTAGGACTGGGAAGTCACCAGTTCTGGTTGCCACTGATGTTGCTGCACGTGGGCTTGACATTAAGGATATAAGGGTCGTGATCAACTATGATTTCCCTACTGGAATTGAGGACTATGTACACCGAATTGGTCGAACAGGAAGGGCTGGAGCCACTGGAGTGTCATACACCTTCATCTCTGAGCAGGACTGGAAACATGCCGGAGACTTGATTAAAGTTTTGGAGGGTGCTAACCAGCTGGTGCCTCCAGAGTTACGACAGATGGCTTTGCGTGGGCCATCTAACTTTGGAAAGGATCGGGGTGGAATGAGCCGTTTTGACTCTGGTGGTGGCCGTTGGGAGTCTGGTGGCCGTGGTGGCATGAGAGATGGTGGGTTTGGCGGTCGTGGGGGCATGAGGGATGGTGGTGGGTTTGGGGGTCGTGGTGGCATGAGGGATGGTGGTGGGTTTGGGGGTCGTGGGGGCATGAGGGATGGTCCAGGTGTGCAAGGAGGAAGAGGTGATTTCTTTCCTGGTAGGGGCAACAGGGGTCGGGGAATGGGTGGCCCTCGAGGTGGTCATGTTGGCTGGGGTAGAGGTGAACGTGACTCTCATGATCGTAACAACATGGATGGAAGAGGACGTGGGCGTGGACGTGGACGTTTTGACAACAGAAGTGATGTTAGTTACAGGAATAGAGGCAGAAGTCGCAGTCGCAGCCCTGAAAGGGTTCGAACATGGGATTATAGCAGCAGAAGTCGCAGTAGAAGCAGAAGTAGAACTCGAAGCAGGAGTAGGAGCTGGAGTAGGGGTCGCAGTCGAAGTCGCAGCTGGTCTCGTGGCCGGAGTCCCAGTTACAGCCGTAGCATAAGCCGGAGTCGGAGTCCCAGTCGCAGCCATGGCCGCAGGAGTCGAAGTTACAGCCGCAGGCATAGTCGAAGCCGCAGCTATGATAGACGCGATAGGCCAAATCAACATATTTCTGATCAGAATGAGCATAGAGCACGAGAAGCTGAAGCTTCTGAACCAAGAACATTCTCCATGTCTCCCAGGTCCCAGGGGAACTCACTTCCGGGAACTGAACATGTGGAGCAGCTACCGGTTGTTAGTAGTGTTGAGACAGTTAATTCAGGGGCTGTAGTTGACCCTTGTCTTCAATCAGCTCCTAATGTCTAG 3444 0.4887 MATAEASAASLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTAPPPTMPTGPPPAVSMPKLAPIPVAHSVQPGGVVAQHGQHLLQTSHQQGQQMNHLSQQHSPQVAPVAQQQPAQAAQAGQQQSSQSLQSMPQPGLQQVRQQQQMLQPMSQQIPPQQMHHQIPQQAIQSQPFGQGATQDHGSYMGQPQAHQFSHQILHYMPYSQSMHSNGQQSSQPIQHNMHGQPLENQQEFKAAFPKVEDVDFKNGSQVGLSPSQYHQNNALPLQGNQNVPAGISPVQVPRVGVNVGQAQPFGGMQQPSAAMQSQQGSADLVYQHGHNFQKQMGPGMMHGQPSNVHPVDQKMGHEDNLRGRAVNEYYYNSGKEMPPMGSQQPNIAPIPISRNQQVFSSDMRIGSSPFQNAMPGGNGLNGVPGHSMHNMFNPPIAVAGNSLTRSHVTDLSPAEIYCQQHEVIATGDNVPPPFMTFDAAGFPPEILREIYSAGFSTPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFMILRQRRNNPLNGPTVLVLAPTRELATQIQDEAIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQIIRSQERGSKVIIFCSTKRLCDQLARSIGRNFGAAAIHGDKSQGERDWVLNQFRTGKSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFISEQDWKHAGDLIKVLEGANQLVPPELRQMALRGPSNFGKDRGGMSRFDSGGGRWESGGRGGMRDGGFGGRGGMRDGGGFGGRGGMRDGGGFGGRGGMRDGPGVQGGRGDFFPGRGNRGRGMGGPRGGHVGWGRGERDSHDRNNMDGRGRGRGRGRFDNRSDVSYRNRGRSRSRSPERVRTWDYSSRSRSRSRSRTRSRSRSWSRGRSRSRSWSRGRSPSYSRSISRSRSPSRSHGRRSRSYSRRHSRSRSYDRRDRPNQHISDQNEHRAREAEASEPRTFSMSPRSQGNSLPGTEHVEQLPVVSSVETVNSGAVVDPCLQSAPNV 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0573 1147 FunFam probable ATP-dependent RNA helicase DDX17 441 682 - -
Lele24g0573 1147 Gene3D - 16 55 - -
Lele24g0573 1147 MobiDBLite consensus disorder prediction 1051 1072 - -
Lele24g0573 1147 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 445 852 - -
Lele24g0573 1147 SUPERFAMILY WW domain 14 56 IPR036020 GO:0005515
Lele24g0573 1147 MobiDBLite consensus disorder prediction 256 285 - -
Lele24g0573 1147 SMART helicmild6 729 813 IPR001650 -
Lele24g0573 1147 MobiDBLite consensus disorder prediction 1012 1033 - -
Lele24g0573 1147 FunFam ATP-dependent RNA helicase RhlB 683 855 - -
Lele24g0573 1147 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 505 679 IPR014001 -
Lele24g0573 1147 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 625 633 IPR000629 -
Lele24g0573 1147 Pfam Helicase conserved C-terminal domain 705 813 IPR001650 -
Lele24g0573 1147 Gene3D - 450 683 IPR027417 -
Lele24g0573 1147 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Lele24g0573 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 828 IPR027417 -
Lele24g0573 1147 MobiDBLite consensus disorder prediction 1034 1050 - -
Lele24g0573 1147 MobiDBLite consensus disorder prediction 1101 1116 - -
Lele24g0573 1147 SMART ultradead3 493 696 IPR014001 -
Lele24g0573 1147 MobiDBLite consensus disorder prediction 1 27 - -
Lele24g0573 1147 MobiDBLite consensus disorder prediction 259 285 - -
Lele24g0573 1147 Gene3D - 684 854 IPR027417 -
Lele24g0573 1147 Pfam DEAD/DEAH box helicase 498 668 IPR011545 GO:0003676|GO:0005524
Lele24g0573 1147 Pfam WW domain 22 52 IPR001202 GO:0005515
Lele24g0573 1147 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 474 502 IPR014014 GO:0003724
Lele24g0573 1147 MobiDBLite consensus disorder prediction 96 177 - -
Lele24g0573 1147 MobiDBLite consensus disorder prediction 952 1011 - -
Lele24g0573 1147 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 708 852 IPR001650 -
Lele24g0573 1147 CDD SF2_C_DEAD 693 822 - -
Lele24g0573 1147 MobiDBLite consensus disorder prediction 853 1125 - -
Lele24g0573 1147 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Lele24g0573 1147 SMART ww_5 21 54 IPR001202 GO:0005515
Lele24g0573 1147 MobiDBLite consensus disorder prediction 1073 1097 - -
Lele24g0573 1147 CDD WW 23 51 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0573 Lele-ChrLele24 3837101 3843070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0573 462 851 Eukaryotic Initiation Factors Gene Family AT3G19760 33.248 4.39e-66 227