Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0565 ATGAAAATATGTTTAGGGAGAGGAGGCCTGGTCAACACTGTCACTGAATGCTTGGCTGATAGAATTGATAAAAAACAATGGCTTCAAGCTCTTGAGGTATTTGAGATGCTTAGAGAGCAATCCTTTTACCAACCAAAAGAAGGGACTTACATGAAACTCATTGTATTGCTTGGAAGATGTGGCCGACCTCAACGTGCCCATCAGCTTTTCAACACTATGGTTGAAGAAGGTTGTCAGCCTACTTCCGAACTCTACACGGCTTTGCTCGCAGCGTACTGTCGCAACAACCTTATTGATGGAGCATTTTCAACTCTTAATGAGATGAAGATTACTTTAATTAAAGCTTGCGTGGATGCTTTGAAATTTGATTTGGTTGAGTCGCTGTATGAAGAGATGGCGGAAAGGTCTATCAACCCGAACACGGTCACTCAAAACATCGTTTTAAGTGGATATGGCAAGGCAGGGAAGTATGATCAGATGGAGAAAGTGCTGTCAAATATGCTGGATAGTACAACAAGCACGCCTGATGCATGGACAATGAACACAATCATCAGTGTCTTTGGTAACAAGGGCCAGATTGATATGATGGAGAAATGGTATGAAAAGTTTCGTAATTTCGGGATAGAACCGGAAACACGCACTTTTAATATTTTGATTGGTGCTTATGGAAAGAAAAGAATGTATGACAAAATGTCCTCTGTGATGGAGTACATGCGCAAGCTTCAATTTCCTTGGACAACTTCAACTTACAACAATGTGATTGAGGCTTTTGCGGCTGTCGGGGATGCCAAACACATGGAATATACATTCGATCAGATGCGTGCCGAGGGTATGAAAGCCGATACCAAGACTTTCTGCTGCCTTATCAACGGTTATGCGAATGCAGGTCTCTTCCATAAAGTAATTAGCAGTGTTAACTTGGCTAAGAAGTTTGAGGTACCTGAGAATGTCTCATTTTGGAATGCCATCATCTCAGCATGTGCAAAGGCCCAGGATTTGATCGAAATGGAGAGAGTTTTCAACCGTATGAAGGATAAGCTGTGCCAGCCAGATGACACTACCTACTGTATCATGATTGAGGCGTATGAAAAAGAAGGTATGCGTGACAAAATTTACTATTTAGAGCAGGAAAGGCAGATGATCACTGAGGATATAGAAAGTGAACAAGCTAATGAATGA 1179 0.4173 MKICLGRGGLVNTVTECLADRIDKKQWLQALEVFEMLREQSFYQPKEGTYMKLIVLLGRCGRPQRAHQLFNTMVEEGCQPTSELYTALLAAYCRNNLIDGAFSTLNEMKITLIKACVDALKFDLVESLYEEMAERSINPNTVTQNIVLSGYGKAGKYDQMEKVLSNMLDSTTSTPDAWTMNTIISVFGNKGQIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAAVGDAKHMEYTFDQMRAEGMKADTKTFCCLINGYANAGLFHKVISSVNLAKKFEVPENVSFWNAIISACAKAQDLIEMERVFNRMKDKLCQPDDTTYCIMIEAYEKEGMRDKIYYLEQERQMITEDIESEQANE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0565 392 Gene3D Tetratricopeptide repeat domain 241 304 IPR011990 GO:0005515
Lele24g0565 392 Gene3D Tetratricopeptide repeat domain 305 381 IPR011990 GO:0005515
Lele24g0565 392 Gene3D Tetratricopeptide repeat domain 114 170 IPR011990 GO:0005515
Lele24g0565 392 Gene3D Tetratricopeptide repeat domain 171 240 IPR011990 GO:0005515
Lele24g0565 392 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Lele24g0565 392 TIGRFAM PPR: pentatricopeptide repeat domain 179 210 IPR002885 -
Lele24g0565 392 TIGRFAM PPR: pentatricopeptide repeat domain 249 281 IPR002885 -
Lele24g0565 392 TIGRFAM PPR: pentatricopeptide repeat domain 320 351 IPR002885 -
Lele24g0565 392 TIGRFAM PPR: pentatricopeptide repeat domain 49 81 IPR002885 -
Lele24g0565 392 TIGRFAM PPR: pentatricopeptide repeat domain 214 242 IPR002885 -
Lele24g0565 392 TIGRFAM PPR: pentatricopeptide repeat domain 84 109 IPR002885 -
Lele24g0565 392 TIGRFAM PPR: pentatricopeptide repeat domain 111 141 IPR002885 -
Lele24g0565 392 TIGRFAM PPR: pentatricopeptide repeat domain 142 170 IPR002885 -
Lele24g0565 392 Pfam Pentatricopeptide repeat domain 110 153 IPR002885 -
Lele24g0565 392 Gene3D Tetratricopeptide repeat domain 9 113 IPR011990 GO:0005515
Lele24g0565 392 Pfam PPR repeat 77 109 IPR002885 -
Lele24g0565 392 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 46 80 IPR002885 -
Lele24g0565 392 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Lele24g0565 392 PANTHER OS07G0661900 PROTEIN 233 370 - -
Lele24g0565 392 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Lele24g0565 392 Pfam PPR repeat family 316 362 IPR002885 -
Lele24g0565 392 Pfam PPR repeat family 247 294 IPR002885 -
Lele24g0565 392 Pfam PPR repeat family 175 222 IPR002885 -
Lele24g0565 392 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Lele24g0565 392 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Lele24g0565 392 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0565 Lele-ChrLele24 3755092 3758730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0565 176 390 Glycosyltransferase AT1G05670 22.422 2.40e-11 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0565 24 3755092 3758730 Lele24g0565 24 3755092 3758730 ECH
Lele21g0569 21 3781007 3782893 Lele24g0565 24 3755092 3758730 hybridization
Lele22g0577 22 3778745 3787849 Lele24g0565 24 3755092 3758730 hybridization