Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0530 ATGCCTCACCAGTTCACCGTTATCACAGCTCAATCCCGATACTCACAGGACGAGGACACCGAACTCTCAATACAGAATTGCTACGTCATAGCCACCGAAGATCTCTATACTAACTCTAGCAGCTTCAAGAGCTACCTCGGACGACCATGGAGGCCTTATTCTCGGACGGTGTTCCTTGAGTCTTATATTGATGACTTCGTGGACCCAAAGGGGTGGACGGAGTGGTCTGTTCCAATGGCGATGATCTGGAGAGTTTGTACTACGGAGAGTACGAGAATTATGGGCCGGGTTCGGGACTTCGATCTCATCACTGAGAAAAGAAAAAATGACAGGAAACAGAAGCTCAAGCGCAGAATCGCCATCGGCGCAGTTTGCACCATCGTCATCATTGGTCTTATAGGAGCAGCCGCTTTCGTAATCGTCAGCAATAACAGTGAAGAAGAAAGCGAAGTCAATGACCATAACAAGAAATCCCCATCGTCCTCTTCTTCTTCCCCCTCAAAGAGTAATTCCAACCAGATTTCTGTATCAGAGAAACTCGTGAAGACCATTTGCAGTTCCACCGATTATCAGGACAAATGCGAGACAAGTCTCACCAAGGAAGTGAAAAAGGATCCAAAACTAGCACAACCCAAGGACGTTCTTAAACTTGCTATCAGTGTCGCTCAGGACGAGGTTAATAAGGCCATCAATAAAACCAAAAGCCTCAACTTTCAATCCGACAAAGAGAAAGGGGCTTACGAGGATTGCAGGAAGCTTCTGGATCGTGCTAAAGACGATCTAGGGAATTCATCCTCACACGTCGGATCAATCGACATGACCAAGCTGACGTCATCCTCATCAGATTTGAACAGTTGGCTCAGTGCGGTTATCGCGTTCCAGGGAGCTTGCCTCGATGGGTTTGAAGATGGGAAACTGAAGACGGATATGAAGAGTGCGTTTAATGATTCAATGGAGTATGTTAGCAATTCTCTTGCAATTCTATCGCAGTTAGGCTCCGTTGTTTCTTCGGCATTAAAGGAAGGTGCTAGTCGTCACTTGCTGTCGTCATCCGATGATAAAGGTCTTCCGGAGTGGATGAACGATGAAGAACGACGTATGTTGAAGGCGGCGGATGATAAACCTACTCCTAACGTCACCGTCGCTAGCGACGGCAGTGGAGACTTCAAAACCATCTCCGAAGCTTTAAAAGCCATACCACAAAAATACGATGGACGGTATGTGGTTTATGTTAAAGCAGGAATATATGACGAAACTGTGATAATAGAGGGGCGAATGGTAAACGTAACCCTTTATGGTGATGGATCACAAAAAAGCATTATTACCGGCAACAAGAACTACGTAGATGGAGTAAGAACTTTCCAAACTGCATCATTTGCGGTAGAAGCAGATGGTTTCTTAGGGAAAGCAATGGGGTTCAGAAACACAGCCGGTCCAGAGAAGCACCAAGCGGTAGCAGCAAGAGTGCAAGGAGATCGTGATGTGTTCGTGAACTGTCGTTTCGAAGGCTACCAAGACACTCTCTACGCTCTAGCCCACCGGCAATTCTACCGGAGCTGTGTGATCTCCGGCACGGTGGACTTCATCTTCGGCGACGCAGCCGCCGTGTTTCAGAACTGCATAATGAACGTAAGGAAGCCCTTAGACAACCAGCAGAACATAGTGACAGCCCAAGGCAGAATGGACCCACAAGAAAAAACCGCCATCGTTCTGCAAAACTGCCAGATCAAGGCCGACGACTCACTCGCCACTTTGAAAGACAAGTTCAAGAGCTACCTCGGTCGGCCATGGAAGGAGTATTCAAGAACCATTGTCATGGAATCTGAAATCGATGACATCATCGACCCTGAAGGGTGGATGGAATGGGAAGGCGACTTTGCACTTAAAACTTTGTTCTATGCTGAGTTCAACAACACAGGACCAGGTTCGAACACTGATAACAGAGTGAAGTGGGCTGGCTACAAAAATATCACTAGGGACGAAGCTAGTAACTTCACCGTCGAATCTTTCTTGGCGGGAAATTGGCTCTCTGGGTTCAGTGTACCGGTTCAGCGAGGCTTGTATAACTGA 2070 0.4725 MPHQFTVITAQSRYSQDEDTELSIQNCYVIATEDLYTNSSSFKSYLGRPWRPYSRTVFLESYIDDFVDPKGWTEWSVPMAMIWRVCTTESTRIMGRVRDFDLITEKRKNDRKQKLKRRIAIGAVCTIVIIGLIGAAAFVIVSNNSEEESEVNDHNKKSPSSSSSSPSKSNSNQISVSEKLVKTICSSTDYQDKCETSLTKEVKKDPKLAQPKDVLKLAISVAQDEVNKAINKTKSLNFQSDKEKGAYEDCRKLLDRAKDDLGNSSSHVGSIDMTKLTSSSSDLNSWLSAVIAFQGACLDGFEDGKLKTDMKSAFNDSMEYVSNSLAILSQLGSVVSSALKEGASRHLLSSSDDKGLPEWMNDEERRMLKAADDKPTPNVTVASDGSGDFKTISEALKAIPQKYDGRYVVYVKAGIYDETVIIEGRMVNVTLYGDGSQKSIITGNKNYVDGVRTFQTASFAVEADGFLGKAMGFRNTAGPEKHQAVAARVQGDRDVFVNCRFEGYQDTLYALAHRQFYRSCVISGTVDFIFGDAAAVFQNCIMNVRKPLDNQQNIVTAQGRMDPQEKTAIVLQNCQIKADDSLATLKDKFKSYLGRPWKEYSRTIVMESEIDDIIDPEGWMEWEGDFALKTLFYAEFNNTGPGSNTDNRVKWAGYKNITRDEASNFTVESFLAGNWLSGFSVPVQRGLYN 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0530 689 SUPERFAMILY Pectin lyase-like 2 76 IPR011050 -
Lele24g0530 689 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 179 331 IPR035513 -
Lele24g0530 689 SUPERFAMILY Pectin lyase-like 376 678 IPR011050 -
Lele24g0530 689 TIGRFAM PME_inhib: pectinesterase inhibitor domain 164 331 IPR006501 GO:0004857
Lele24g0530 689 MobiDBLite consensus disorder prediction 156 175 - -
Lele24g0530 689 FunFam Pectinesterase 372 687 - -
Lele24g0530 689 FunFam Pectinesterase 177 332 - -
Lele24g0530 689 MobiDBLite consensus disorder prediction 148 175 - -
Lele24g0530 689 Gene3D - 372 687 IPR012334 -
Lele24g0530 689 Pfam Plant invertase/pectin methylesterase inhibitor 180 327 IPR006501 GO:0004857
Lele24g0530 689 Gene3D - 1 97 IPR012334 -
Lele24g0530 689 ProSitePatterns Pectinesterase signature 2. 522 531 IPR033131 -
Lele24g0530 689 Gene3D Invertase/pectin methylesterase inhibitor family protein 176 333 IPR035513 -
Lele24g0530 689 Pfam Pectinesterase 1 80 IPR000070 GO:0030599|GO:0042545
Lele24g0530 689 Pfam Pectinesterase 378 674 IPR000070 GO:0030599|GO:0042545
Lele24g0530 689 PANTHER PECTINESTERASE 1 79 - -
Lele24g0530 689 CDD PMEI-like_3 183 333 - -
Lele24g0530 689 SMART PMEI_2 176 327 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0530 Lele-ChrLele24 3499973 3503493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0530 1 75 Carbohydrate Esterase AT2G26450 44.000 1.55e-16 81.6