Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0529 ATGGAGCAGCAAAGGCACCAAAAGGAGGCCCAACGGGGGGAAGAAGCTGAAGAGCTACAACATGGCCCTTTATCTGTTGAAGAGCTTCAGGCATCAGGCATATCTGCCACCGACGTTAAGAAACTTAAAGATGCCGGTCTTTGGACGGTTGAATCTGTCGCTTTCTCTCCTAGAAAGGACCTTCTGCAGATTAAAGGAATCAGTGACGCTAAAGTTGATAAGATCATTGAAGCAGCTTCTAAATTGGTGCCGTTGGGTTTCACTAGTGCTGCACAACTTCATTCCCAGAGGCTTGCAATTATTCAAATAACATCAGGATCAGAAGAGCTAGACAAGATATTGGAAGGAGGGATGGAGACAGGATCTATAACTGAGCTATATGGTGAATTTCGATCAGGGAAGACTCAGTTGTGTCATACTCTGTGTGTCACTTGCCAACTGCCACTTGATCAAGGAGGAGCTGAGGGCAAAGCTATGTACATTGATGCAGAGGGTACCTTTAGACCACAGCGTCTCTTACAAATAGCCGAGAGGTTTGGACTAAATGGAGCTGATGTGTTGGAAAATGTTGCCTATGCTAGAGCATATAACACTGATCATCAATCACGGCTTCTGCTTGAAGCAGCTTCCATGATGGTGGAAACAAGGTTTGCTCTGGTAATAGTTGACAGTGCTACTGCTCTCTATAGGACAGATTTTAGTGGAAGGGGGGAACTTTCTGCCCGGCAAATGCATCTCGCGAAGTTCCTTCGTAGCCTTCAGAAGTTAGCAGATGAGTTTGGTGTGGCTGTTGTGATAACAAACCAAGTAGTTTCACAAGTAGATGGTTCTGCAGTCTTTGCCGGACCTCAAATCAAGCCTATTGGTGGCAACATTATGGCTCATGCAACAACGACAAGGCTACATCTTCGAAAAGGTAGAGGGGAAGAACGCATCTGTAAAGTGATAAGTTCTCCTTGTTTGGCTGAGGCTGAAGCAAGGTTTCAGATATCTCCAGAAGGCGTCACTGATGTTAAAGACTGA 1023 0.4545 MEQQRHQKEAQRGEEAEELQHGPLSVEELQASGISATDVKKLKDAGLWTVESVAFSPRKDLLQIKGISDAKVDKIIEAASKLVPLGFTSAAQLHSQRLAIIQITSGSEELDKILEGGMETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGAEGKAMYIDAEGTFRPQRLLQIAERFGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALVIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVSQVDGSAVFAGPQIKPIGGNIMAHATTTRLHLRKGRGEERICKVISSPCLAEAEARFQISPEGVTDVKD 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0529 340 ProSiteProfiles RecA family profile 2. 277 340 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Lele24g0529 340 Gene3D - 22 94 - -
Lele24g0529 340 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 2 340 - -
Lele24g0529 340 SMART AAA_5 120 307 IPR003593 -
Lele24g0529 340 SUPERFAMILY Rad51 N-terminal domain-like 18 85 IPR010995 GO:0000166
Lele24g0529 340 Gene3D - 99 340 IPR027417 -
Lele24g0529 340 MobiDBLite consensus disorder prediction 1 22 - -
Lele24g0529 340 FunFam DNA repair protein RAD51 homolog 22 94 - -
Lele24g0529 340 TIGRFAM recomb_RAD51: DNA repair protein RAD51 26 340 IPR011941 GO:0000150|GO:0000724|GO:0003690|GO:0003697|GO:0008094|GO:1990426
Lele24g0529 340 Pfam Rad51 85 338 IPR013632 -
Lele24g0529 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 339 IPR027417 -
Lele24g0529 340 FunFam DNA repair protein Rad51 homolog 98 340 - -
Lele24g0529 340 MobiDBLite consensus disorder prediction 1 24 - -
Lele24g0529 340 PIRSF Rad51 9 340 IPR016467 -
Lele24g0529 340 ProSiteProfiles RecA family profile 1. 99 270 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lele24g0529 340 CDD Rad51_DMC1_radA 103 335 IPR033925 GO:0003677
Lele24g0529 340 Pfam Helix-hairpin-helix domain 30 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0529 Lele-ChrLele24 3495638 3498109 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0529 24 3495638 3498109 Lele24g0529 24 3495638 3498109 ECH
Lele21g0529 21 3503444 3508869 Lele24g0529 24 3495638 3498109 hybridization
Lele22g0543 22 3500488 3509951 Lele24g0529 24 3495638 3498109 hybridization