Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0527 ATGATGTTCAATGCTCAGGGCCCTCCTAAAAAATCTCGTCTCCTTGCCATCCTCAGTGGAAATTCATGTGACAATAAACAAAACCGGAAACAAGATGATTCTCAGGATCAATCTCCATATCCCGTTCCAGAGCTTACTTCATCCGGGCGTCTTGAGGTTCATGTTTTGGTCAAACCAACTGCTGATGAACTTCATCGTGTTCTTGAAGCATTGGAGCCAAATTTTGTTTACCTGCAAGGCGTAGAAGATAATGAACACATTGGGTCCCTAGTATGGGAAGATGTTGATCTGTCTAGCACAGAAGCCTTATGTGAACTATTTTCTTCCAAATTACCTAATACCGTTTATTTGGAAACTCCTAAAGGAGAAAATTTGGCAGAGGCTCTGCATTCTAAGGGAATTCCTTACGCAATATATTGGAAGAGTGAATTTTCAAAGTATACTGCATCACATTTTCGTCAAGCTTTTTTCTCAGTGCCACAAAGTACCTCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCTTCTTTCAGATTATACTGTGTACAAAACAATGTCTCACCTTCAAACCGCATGAAGAGCAGAAGTAAGCTTGAGCCACAAATGTTTGGTGACCCTCCTAACATTGATATTGCTCCATTTGAAGCAGACATGAATGCGGAAGAAAACTCACCTGAGACGATTTCTGCTCTGAAGATTTATGATGATGATATGAAAATGAGATTTCTTGTGTGTGGAGTTCCCTGCATGCTGAATACTTGCTTATTGGAATCATTGGAGGAAGGACTCAATGCTCTCCTGTGTACAGAAATACGGGGATGTAAACTTCACAACCGGACAAGTGCTCCACCACCTCCTCTCCAGGCAGGGACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACATGTAGTTCTGCTCACATATCGATCTTGGTGTCTGGTAGTGCAGATACATGCTTTAATGATCAGATTTTGGAGAATCATATAAAAAAGGAGCTGATTAAGAAGAGTCATCTAGTTCAGGCATCAATTAACTGTGAACAAAGCAACTTACCTTCCTCTGAGCCTCGGAGGTCAGCCTCGATAGCTTGTGGGGCTAGCGTATTTGAAGTTTGCATGCAGGTTCCTACATGGGCTTCACTGGTTCTGAGACAGCTTGCACCAGAAGTGTCGTTCCGCAGCCTAGTTGTGCTGGGAGTAGCCAGTATTCAAGGATTGCCTGTTGCATCATTTAAGAAAGTTGATGCCGAACGTCTCCTTTACTTTTGTTCAAGGCAGTCGGAAAAAAATTGCCTTAGTGACCCCATTTCTTTTGGGCATCCTAGTTGGCTGGTACCTCCAATGCCTACTCGAACAAGATCAGAACCTTTCTCTGGAATAAAGTCTGTTAATTCTTGTAGCCTTCAAGTCAGTGATAGTGGTAACAATAGACAGAAATTGAACATTGCAGCAATGAGGCCAATTCCTCACTCACATTGTCAAAAGATTGGACCTTTTTCTGGATTGTCCGAGGGGGAAAGGCTTGATGGAGAACGTCGAAAATCAAATCTGCCAATGGCTCCAATAAAGCATAATGGTTTAGGCTCTAATCCAGTCACAAATAGGAAATCTTCGTCGACTTCCTTTCAGGCTCAGCAGATCGTTACATTAAATCCACTACCCATGAAGAAGCATGGTTGTGACAGAGCTCCAATACGGACTTGTTCAGAGGAGGAATTCCTGAAGGATGTAATGCAGTTTCTTATCCTTCGTGGGCATTCTCGGCTAATTCCACAAGGTGGTCCTACTGAATTCCCTGAAGCCATTCTGAACGCTAAACGCCTCGATCTTTTTAACTTGTACAGAGAGGTGGTATCTAGAGGAGGGTTTCATGTTGGGAATGGCATCAATTGGAAAGGACAAGTTTTCTCAAAGATGCGGAATCACACTTTGACAAATAGAATGACAGGTGTTGGCAATACACTTAAAAGACATTATGAAACTTATCTTCTAGAGTATGAACTGGCTCATGATGACGTAGATGGAGAGTGCTGCTTGTTGTGCCGCAGTAGCGCAGCTGGTGATTGGGTGAATTGCGGGATATGCGGCGAGTGGGCTCACTTTGGCTGTGATAGGCGTCAAGGACTCGGTGCATTTAAGGATTACGCTAAAACTGATGGGCTAGAGTACGTTTGCCCACATTGCAGCATCTCAAATTTCAGAAAGAAATCTCAGAAAACTTCAAACGGATATTAA 2247 0.4317 MMFNAQGPPKKSRLLAILSGNSCDNKQNRKQDDSQDQSPYPVPELTSSGRLEVHVLVKPTADELHRVLEALEPNFVYLQGVEDNEHIGSLVWEDVDLSSTEALCELFSSKLPNTVYLETPKGENLAEALHSKGIPYAIYWKSEFSKYTASHFRQAFFSVPQSTSSHTWDAFQLALASFRLYCVQNNVSPSNRMKSRSKLEPQMFGDPPNIDIAPFEADMNAEENSPETISALKIYDDDMKMRFLVCGVPCMLNTCLLESLEEGLNALLCTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSSAHISILVSGSADTCFNDQILENHIKKELIKKSHLVQASINCEQSNLPSSEPRRSASIACGASVFEVCMQVPTWASLVLRQLAPEVSFRSLVVLGVASIQGLPVASFKKVDAERLLYFCSRQSEKNCLSDPISFGHPSWLVPPMPTRTRSEPFSGIKSVNSCSLQVSDSGNNRQKLNIAAMRPIPHSHCQKIGPFSGLSEGERLDGERRKSNLPMAPIKHNGLGSNPVTNRKSSSTSFQAQQIVTLNPLPMKKHGCDRAPIRTCSEEEFLKDVMQFLILRGHSRLIPQGGPTEFPEAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCRSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFRKKSQKTSNGY 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0527 748 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 733 IPR013083 -
Lele24g0527 748 ProSiteProfiles ARID domain profile. 571 675 IPR001606 GO:0003677
Lele24g0527 748 SMART ARID_2 568 671 - -
Lele24g0527 748 MobiDBLite consensus disorder prediction 521 541 - -
Lele24g0527 748 CDD ARID 573 671 - -
Lele24g0527 748 Gene3D - 564 676 IPR036431 GO:0003677
Lele24g0527 748 MobiDBLite consensus disorder prediction 22 45 - -
Lele24g0527 748 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 9 748 IPR042293 -
Lele24g0527 748 CDD PHD_ARID4_like 681 732 - -
Lele24g0527 748 Pfam ARID/BRIGHT DNA binding domain 574 671 IPR001606 GO:0003677
Lele24g0527 748 SUPERFAMILY ARID-like 571 685 IPR036431 GO:0003677
Lele24g0527 748 SUPERFAMILY FYVE/PHD zinc finger 667 735 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0527 Lele-ChrLele24 3475511 3481679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0527 2 747 ARID Transcription Factor Family AT3G43240 63.165 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele24g0527 ARID 7e-14 CL0123