Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0508 ATGAGACGGAGATTTCTCTGCCAATTCTCGGGTCATGGGCTTATCCGATCGACCCGTCGAATGCTCCGAATTGGCAAACCGGGCCGCTGCGGCTTGAATCTGAGCCGGGGACATGGACCTGCCGCCGACGATGTCGGGCAGGGGAAATGTGCGTTGTTAAAACTAAGATTACATGGGATGGCCAATCCCAGAATAAATGCCTTGAGAAGTGACGGCCCTGAGCAAAACTCAAAACCAGGACAGAAGAAAATGATCTCCTCTGTTAAAAAAATTGTTAACCTAAATGAACGGGGCGACCCGCCGGCCCGAGTGACGAGCCCTACTTGGTCACACTCGGCTCCTGAGAATTCTAGAAGGGTCTATCTGATAAAACCCCCATCCTTTGTACAGGGTTTTTATCTTCATTTCTTCAACGCTTTCATTCCTCCACTCTCAAAGCTCGGTCGCAAATCCCAATCTATACTTTCACTTCCGATTAAGGCCGTAGACCTTCCAATGGCGACCGCTCAGCTCACTGCATCATCATGGTCTACCATGAATTTGCCCTCGTTCGAAGGTCTTCGACCTTCCATGGTTCACTGTTCTGCTGTCAGACACGTAAGAATAGGTTGCCTTACTCAAAGGTCGTTCCGGGGTTTGGTCGTTAAAGCCGCAACTGTTGTTGCCCCCAAGTATACCTCAATTAAGCCTTTGGGTGACAGAGTGCTGGTAAAACTTAAGGATTCTGAAGAGAAGACTGATGGTGGTATTTTACTTCCTACAAGTGCTCAAACAAAACCTCAAGGCGGTGAAGTGGTTGCTATTGGAGAGGGAAAGACAGTTGGGAAGAGCAAAGTTGACATTGCTGTGAAGACTGGCGCACAAGTTGTGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTTAATGGTTCAAAGCATCTGATACTAAAGGATGATGACATTGTTGGAATCCTTGAAACAGATGATATCAAGGATCTTAAACCTTTGAATGATAGAGTGTTGATCAAGGTTTCAGAGGCTGAGGAAAAAACTACTGGGGGTTTGTTATTGACAGAGGCAACAAAAGAGAAACCATCTACTGGAACGGTGATAGCAGTTGGACCAGGGTCTTTAGATGGGGAAGGCAACAGGAAACCATTGTCTGTGAGTCCCGGAAACACTGTTCTGTACTCCAAATATGCGGGGAATGACTTCAAGGGCAAGGATGGATCTGACTACATTACCTTGAGGGCCTCAGATGTCATGGCTGTCCTTACCTAG 1260 0.4714 MRRRFLCQFSGHGLIRSTRRMLRIGKPGRCGLNLSRGHGPAADDVGQGKCALLKLRLHGMANPRINALRSDGPEQNSKPGQKKMISSVKKIVNLNERGDPPARVTSPTWSHSAPENSRRVYLIKPPSFVQGFYLHFFNAFIPPLSKLGRKSQSILSLPIKAVDLPMATAQLTASSWSTMNLPSFEGLRPSMVHCSAVRHVRIGCLTQRSFRGLVVKAATVVAPKYTSIKPLGDRVLVKLKDSEEKTDGGILLPTSAQTKPQGGEVVAIGEGKTVGKSKVDIAVKTGAQVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDDIKDLKPLNDRVLIKVSEAEEKTTGGLLLTEATKEKPSTGTVIAVGPGSLDGEGNRKPLSVSPGNTVLYSKYAGNDFKGKDGSDYITLRASDVMAVLT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0508 419 Gene3D GroES chaperonin 221 320 IPR037124 GO:0006457
Lele24g0508 419 Gene3D GroES chaperonin 321 419 IPR037124 GO:0006457
Lele24g0508 419 SMART Cpn10_2 227 318 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele24g0508 419 SMART Cpn10_2 325 418 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele24g0508 419 Pfam Chaperonin 10 Kd subunit 228 317 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele24g0508 419 Pfam Chaperonin 10 Kd subunit 326 417 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele24g0508 419 FunFam 20 kDa chaperonin, chloroplastic 221 320 - -
Lele24g0508 419 PRINTS 10kDa chaperonin signature 250 271 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele24g0508 419 PRINTS 10kDa chaperonin signature 228 243 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele24g0508 419 PRINTS 10kDa chaperonin signature 284 296 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele24g0508 419 PRINTS 10kDa chaperonin signature 305 318 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele24g0508 419 MobiDBLite consensus disorder prediction 69 83 - -
Lele24g0508 419 PANTHER 10 KDA HEAT SHOCK PROTEIN 324 417 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele24g0508 419 CDD cpn10 227 318 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele24g0508 419 ProSitePatterns Chaperonins cpn10 signature. 326 350 IPR018369 GO:0005524|GO:0006457
Lele24g0508 419 FunFam 10 kDa chaperonin 324 419 - -
Lele24g0508 419 Hamap Co-chaperonin GroES [groES]. 325 419 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele24g0508 419 MobiDBLite consensus disorder prediction 66 85 - -
Lele24g0508 419 Hamap Co-chaperonin GroES [groES]. 227 319 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele24g0508 419 CDD cpn10 326 418 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele24g0508 419 ProSitePatterns Chaperonins cpn10 signature. 228 252 IPR018369 GO:0005524|GO:0006457
Lele24g0508 419 SUPERFAMILY GroES-like 325 418 IPR011032 -
Lele24g0508 419 SUPERFAMILY GroES-like 226 319 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0508 Lele-ChrLele24 3312832 3318999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0508 166 419 Calmodulin-binding Proteins AT5G20720 74.609 3.66e-130 373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0508 24 3312832 3318999 Lele24g0508 24 3312832 3318999 ECH
Lele21g0507 21 3325043 3326978 Lele24g0508 24 3312832 3318999 hybridization
Lele22g0524 22 3327667 3330285 Lele24g0508 24 3312832 3318999 hybridization