Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0469 ATGACTAGTTCAGAGAATTATTCGAGCGAGGAGACTAATCAGCTAGAAGATGGAGATTCAGGAGGGACCAGACGCTCTTACGAGTGTACATTTTGCAGAAGGGGCTTCACCAACGCTCAGGCGTTAGGGGGTCACATGAATATTCATAGAAAAGACAGAGCCAAGGCCAAACAAAGTACGCCTAATAATAATAATTCTTCCTTGCTTTCAAACAAATTGTCCAAGGACGAGTCCTTCGCATCAGCCTCCCCTTTTCTTTCTGAAATATCCTCAGGCCAACAATCCTCAACGTTTTACTCCATTTTCGAGGTTCAGGGACACTATAACATGTATTTCCCAACAAACCCTAGAAACCCTTCTCCTGCAACATATGCCTTTCCCTTTGATTATCTCAATCCGAGGACTCGTCGTCAGTCTGTGGATATGAACGAAGAGCTTCTAGGGGCCAATTTGAGTCTCCAGATTGGTCCGAGTCATCATGTGGAAAGTACTCAGAAAGACGGCGAAGTGGATTTAGAGCTCAGACTTGGCCATCATCCATATTGA 546 0.4469 MTSSENYSSEETNQLEDGDSGGTRRSYECTFCRRGFTNAQALGGHMNIHRKDRAKAKQSTPNNNNSSLLSNKLSKDESFASASPFLSEISSGQQSSTFYSIFEVQGHYNMYFPTNPRNPSPATYAFPFDYLNPRTRRQSVDMNEELLGANLSLQIGPSHHVESTQKDGEVDLELRLGHHPY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0469 181 SUPERFAMILY beta-beta-alpha zinc fingers 24 53 IPR036236 -
Lele24g0469 181 MobiDBLite consensus disorder prediction 50 70 - -
Lele24g0469 181 MobiDBLite consensus disorder prediction 157 181 - -
Lele24g0469 181 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Lele24g0469 181 MobiDBLite consensus disorder prediction 1 23 - -
Lele24g0469 181 MobiDBLite consensus disorder prediction 1 16 - -
Lele24g0469 181 MobiDBLite consensus disorder prediction 162 181 - -
Lele24g0469 181 Gene3D Classic Zinc Finger 3 84 - -
Lele24g0469 181 PANTHER OS07G0101800 PROTEIN 1 179 - -
Lele24g0469 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0469 Lele-ChrLele24 3002092 3002637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0469 19 70 C2H2 Transcription Factor Family AT3G09290 57.692 1.17e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele24g0469 None None None