Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0461 ATGGTGTCAGCACCGCCAGCCGAAAGTGGGTATTCATCCGGGAAGTTGAGGATAGCAAATGGGCCTCTCATGGCGAGCGAGGAGGATATGGAACGATGTCGTTTGGCAATTGCTGGGGAGAAGCCTCTGCGGCACGTTGAAAAGTTATGTCCATTGTATCTGGACGGTCAAGGGTATCAAAAGGTAGGGCTGTTTAAGGGGCATAACGGAATTGCTTTTGTACCTTGTGACAAAGATAATGATGGACTACTGTGTGCATTAGACCACAAGAGATCTAACGAGGACTGGAGGGTTAATTTCTGTGCGTTTCCTTTCACATCTGATATGGATCTTGCAGGAAGAAGATTCTTGATTTCTGGTTCTGGGTCGCCATTATCAAGCCCAGTGAGTTCAATCCTTCACCCACATTCGCATTCTGCGAGTACCAGTTTTCCCATTATAGCTATCGCTATAATAGGGATACTCGCCACAGCTTTCTTGCTCGTTAGCTACTATATCTTCGTCATCAAATGCTGCCTCAATTGGCACCGCATAGATCTCCTAAGACGGTTTTCTCCATCCCGGCGGCGAGAGGAACCCCCGATGACATATTCGCCGGCGGGCACGGAGCCTCGAGGACTCGACGAGGCCTTGATCCGATTAATCCCAGTCATCCATTACAGAGCGGAGGAAAACAGAGAATCCGGAGAGCGAAGCTTCACGGAATGCTCTGTTTGCTTGACCGAGTTCCGCGAGAAGGAGAAGCTGAGGATTATACCGAATTGCCGCCACGTGTTCCACATAGATTGCATCGACGTTTGGCTTCAGAACAACGCCAATTGCCCACTTTGCAGAACAAGCATTTCGCTATCAACCAGATTCCAAGTCGACCAGATTCTAAATTCCAGACCCTCCACCCAAGATCGACGCCGGTATGGCGAAAATCTCAACGGTGAGGATGAAGATTTTGTTGTGATTGAACTGAGCACTATTGGTCACGATAGAGGCCAGAACTCGAACGGAACACAGGAAAGAGAAAACTCACCACGAGAGGTGAGCCCTTCGCCTAGGAAGATAATGGAGCAGAAGAAAAAACCATGTAAGTTTCAGAAAGTGACGAGCATGGGAGACGAGTGCATCGATACAAGAGGTAAGGATGGGCAATTCTCAGTACAGCCCATAAGGAGGTCATTCTCCATGGATTCTTCAGGGGACAGACAGTTGTACATGGCAGTTCAAGAAGCTCTGAAGAAACAGAACAGGGAACAAACGAGTGAGGTATCATCGTCCTCCATTAATGAAGGGTGCAGCAGTAGCAGTAGTGTTAGAGTGAAGAGGTCATTCTTTTCCTTCGGACATGGTAGCAGTAGATCCAGAAGTTCAGTCCAACCTGTTTACGTGGACCACTAA 1389 0.4824 MVSAPPAESGYSSGKLRIANGPLMASEEDMERCRLAIAGEKPLRHVEKLCPLYLDGQGYQKVGLFKGHNGIAFVPCDKDNDGLLCALDHKRSNEDWRVNFCAFPFTSDMDLAGRRFLISGSGSPLSSPVSSILHPHSHSASTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRREEPPMTYSPAGTEPRGLDEALIRLIPVIHYRAEENRESGERSFTECSVCLTEFREKEKLRIIPNCRHVFHIDCIDVWLQNNANCPLCRTSISLSTRFQVDQILNSRPSTQDRRRYGENLNGEDEDFVVIELSTIGHDRGQNSNGTQERENSPREVSPSPRKIMEQKKKPCKFQKVTSMGDECIDTRGKDGQFSVQPIRRSFSMDSSGDRQLYMAVQEALKKQNREQTSEVSSSSINEGCSSSSSVRVKRSFFSFGHGSSRSRSSVQPVYVDH 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0461 462 MobiDBLite consensus disorder prediction 343 360 - -
Lele24g0461 462 SUPERFAMILY RING/U-box 235 286 - -
Lele24g0461 462 SMART ring_2 236 277 IPR001841 -
Lele24g0461 462 CDD RING-H2_PA-TM-RING 235 278 - -
Lele24g0461 462 MobiDBLite consensus disorder prediction 325 342 - -
Lele24g0461 462 MobiDBLite consensus disorder prediction 413 435 - -
Lele24g0461 462 MobiDBLite consensus disorder prediction 324 360 - -
Lele24g0461 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 283 IPR013083 -
Lele24g0461 462 Pfam Ring finger domain 235 278 IPR001841 -
Lele24g0461 462 PANTHER RING-H2 FINGER PROTEIN ATL16 127 458 IPR044600 GO:0016567|GO:0016740
Lele24g0461 462 MobiDBLite consensus disorder prediction 415 435 - -
Lele24g0461 462 FunFam E3 ubiquitin-protein ligase ATL6 196 284 - -
Lele24g0461 462 ProSiteProfiles Zinc finger RING-type profile. 236 278 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0461 Lele-ChrLele24 2945909 2951813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0461 133 461 C3H Transcription Factor Family AT1G04360 51.955 2.90e-102 308