Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0407 ATGGATTCCGATCAAGGGAAACTTTTTATTGGTGGGATATCGTGGGATACGAACGAAGACAAGCTGAGAGATCATTTCAGCAACTATGGTGATGTTCTGCACACCTCCGTTATGAGGGAGAAGAACACTGGAAAGCCCAGAGGCTTCGGATTCGTTGTGTTCGCAGATCCTTCAATTCTCGATAGGGTTCTCGAGGAGAAGCACGTAATCGATGGTAGAACGGTAGACGCTAAGAAGGCCTTCTCCAGAGAGGATCAACAAATTTCTGCCCCTTCTAGGGCCGGAAATCCCAACTCTTATAGAAATTCTGGAAATGGAGGAAATATCAGGACCAAAAAAATATTTGTTGGAGGGTTGCCTCCTACATTGACTGAAGAAATGTTTCGAGAGTATTTTGAGGCTTATGGTCTTGTTACTGATGTAGTAGTCATGTATGACCAGAATACTGGACGGCCACGTGGATTTGGGTTTATTTCATTTGACACTGAAGATGCAGTTGACAGGGTTTTGCATAAGCCATTTCACGATTTAAATGGTAAGCAAGTAGAAGTGAAGCGTGCACTTCCAAAGGATGCTAATCCAGGTGCAAGTGGTCGTATGGGTGGTGGAGGAGGAGGTGGCAGTGGTTATCAGGGGTATGGGGCATCTGGTGGCAGCCAAAATGCATATGATGGTCGGATGGATCCTGGTAGGTATGTGCAGCCTCCAAGCGCTGGGGGTGGATTTCCACCTTATGGTGCTGCTGGGTATGGTTACGGTCCTGCTAATAATGGCATGGGTTATGCTGGATATGGGAGTTATGGCGGTGCAAGCACTGGGTATGGTGGACCTGCTGGTGCAACCTATGGGAATCCCAACATCCCTAATGCTGCTTATGCGGGTGGTCTGCCTGGTGCCCCAAGGAGTTCATGGTCTGCTCAAGCACCCTCTGGTTATGGTTCTATTGGCTATGGGAATACTGCTGCTTGGGGTGCTCCAGGTGGCGGTGCTGGATCTGGTGGCAGTGGTGGCCCTGGTTCAGCACCTGCAGGTCAATCACCCAGTGGAGCTGCTGGTTATGGGAATCAAGGGTATGGTTATGGTGGTTATGGTGGGTATGGTGGAAGTGATGGTTCGTACGGGAACCCAGGCGCATATGGTGCTGTTGGGGGGCGTTCTGGAAGTGCCCCAAACAGCTATGCTGGTGGTCCCGGAGGAAATGAATCACAAGGGAGTGGTGGCAACTACACTGGAAGTGGCTATGGTGATGCAAATGGAAATTCGGGATATGGAAATGCTGCATGGAGATCTGATCCTGCCCAACCATCTGGAAATTATGGGACTCCTCAGGCAAATGGTCCTCATGGTGGACAAGTTGGTTATGGCAGCAGCTATGGTGGTGCTCAGTGA 1389 0.4982 MDSDQGKLFIGGISWDTNEDKLRDHFSNYGDVLHTSVMREKNTGKPRGFGFVVFADPSILDRVLEEKHVIDGRTVDAKKAFSREDQQISAPSRAGNPNSYRNSGNGGNIRTKKIFVGGLPPTLTEEMFREYFEAYGLVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKPFHDLNGKQVEVKRALPKDANPGASGRMGGGGGGGSGYQGYGASGGSQNAYDGRMDPGRYVQPPSAGGGFPPYGAAGYGYGPANNGMGYAGYGSYGGASTGYGGPAGATYGNPNIPNAAYAGGLPGAPRSSWSAQAPSGYGSIGYGNTAAWGAPGGGAGSGGSGGPGSAPAGQSPSGAAGYGNQGYGYGGYGGYGGSDGSYGNPGAYGAVGGRSGSAPNSYAGGPGGNESQGSGGNYTGSGYGDANGNSGYGNAAWRSDPAQPSGNYGTPQANGPHGGQVGYGSSYGGAQ 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0407 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Lele24g0407 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Lele24g0407 462 MobiDBLite consensus disorder prediction 385 462 - -
Lele24g0407 462 MobiDBLite consensus disorder prediction 85 107 - -
Lele24g0407 462 MobiDBLite consensus disorder prediction 328 348 - -
Lele24g0407 462 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Lele24g0407 462 MobiDBLite consensus disorder prediction 81 107 - -
Lele24g0407 462 MobiDBLite consensus disorder prediction 393 445 - -
Lele24g0407 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lele24g0407 462 FunFam heterogeneous nuclear ribonucleoprotein 1 104 226 - -
Lele24g0407 462 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Lele24g0407 462 Gene3D - 4 88 IPR012677 -
Lele24g0407 462 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lele24g0407 462 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lele24g0407 462 Gene3D - 107 226 IPR012677 -
Lele24g0407 462 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 460 - -
Lele24g0407 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lele24g0407 462 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lele24g0407 462 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Lele24g0407 462 MobiDBLite consensus disorder prediction 188 225 - -
Lele24g0407 462 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0407 Lele-ChrLele24 2591614 2593969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0407 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.519 2.18e-09 57.8