Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0406 ATGGATTCGGATCAAGGTAAGCTTTTTATTGGTGGGATATCGTGGGATACGACCGAGGATAAACTGAAAGATCATTTCAGCAACTACGGTGATGTTTTGCACACATCCGTTATGAGGGAGAAGAACACTGGGAAGCCCAGAGGCTTTGGATTCGTTGTATTCGCAGATCCTTCGATTCTTGATAGGGTTCTGGAGGAGAAGCACATAATCGATGGCAGAACGGTAGATGCCAAGAAGGCCTTCTCTAGAGAGGATATACAAATATCTGCCACTTCCAGGACTGGAAATCCCAACTATTATAGAAATTCTGGAAATGGAGGAAATACCAGGACCAAAAAAATATTTGTTGGAGGGTTGCCTCCTACATTGACTGAAGAAATGTTTCGAGAATATTTTGAGGCTTATGGTCTTGTTACTGATGTAGTAGTCATGTATGACCAGAATACTGGACGGCCACGTGGATTTGGGTTTATTTCATTTGACACTGAAGATGCAGTTGACAGGGTTTTACATAAGCCATTTCACGATTTAAATGGTAAGCAAGTAGAAGTGAAGCGTGCACTTCCAAAGGATGCTAATCCGGGTGCAAGTGGTCGTATGGATGGTGGGGGAGGAGGTGGCAGTGGTTATCAGGGGTATGGGGCATCTGGTGGCAGCCAAAATGCATATGATGGACTGATGGATTCTGGTAGGTATGTGCAGCCTCCAATCGCTGGGGGTGGATTTCCACCTTATGGTTCTTCTGGATATGGTGCTTCTGGGTACGGTTATGGTCCTGCTAATGCTGGCATGGGTTATGCCGGATATGGAAGTTATGGTGGTGCAAGCGCTGGGTATGGTGGACCTGCTGGTGCAACCTATGGGAATCCCAACATCCCTAATGCTGCCTATGCTGGTGGTCTGCCTGGTGCCCCAAGGAGTTTGTGGCCTGCTCAAGCACCCTCTGGTTATGGTTCTATTGGCTATGGGAATACTGCTGCTTGGGGTGCTCCAGGTGGTGGTGCTGGATCTGGTGGCAGTGGCGGCCCTGGTTCAGCACCTGCAGGTCAATCACCCAGTGGAGCTGCTGGTTATGGGAATCAAGGGTATGGCTATGGTGGGTATGGTGGAAGTGATAGTTCTTTTGGGAACCCTGGCGCATATGGTGCTGTTGGGGGGCGTTCAGGAAGTGCCCCAAACAGCCATGCTAGTGGCCCTGGAGGAAATGAATCACAAGGGAGTGGTGGCAACTACAATGGAAGCGGTTATGGTGATACAAACGGAAGTTCAGGATATGCAAATGCTGCATGGAGATCTGATCCTGCGCAACCATCTGCAAATAATGGGACTCCTCAGGCAAATGGTCCTCATGGTGGACAAGTTGGTTATGGCAGCAGCTATGGTGGTGCACAGTCACGGCAGGCCCAACAACAGTAA 1416 0.4901 MDSDQGKLFIGGISWDTTEDKLKDHFSNYGDVLHTSVMREKNTGKPRGFGFVVFADPSILDRVLEEKHIIDGRTVDAKKAFSREDIQISATSRTGNPNYYRNSGNGGNTRTKKIFVGGLPPTLTEEMFREYFEAYGLVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKPFHDLNGKQVEVKRALPKDANPGASGRMDGGGGGGSGYQGYGASGGSQNAYDGLMDSGRYVQPPIAGGGFPPYGSSGYGASGYGYGPANAGMGYAGYGSYGGASAGYGGPAGATYGNPNIPNAAYAGGLPGAPRSLWPAQAPSGYGSIGYGNTAAWGAPGGGAGSGGSGGPGSAPAGQSPSGAAGYGNQGYGYGGYGGSDSSFGNPGAYGAVGGRSGSAPNSHASGPGGNESQGSGGNYNGSGYGDTNGSSGYANAAWRSDPAQPSANNGTPQANGPHGGQVGYGSSYGGAQSRQAQQQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0406 471 Gene3D - 105 225 IPR012677 -
Lele24g0406 471 MobiDBLite consensus disorder prediction 386 471 - -
Lele24g0406 471 Gene3D - 4 86 IPR012677 -
Lele24g0406 471 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Lele24g0406 471 MobiDBLite consensus disorder prediction 390 448 - -
Lele24g0406 471 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Lele24g0406 471 MobiDBLite consensus disorder prediction 188 209 - -
Lele24g0406 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Lele24g0406 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Lele24g0406 471 MobiDBLite consensus disorder prediction 333 353 - -
Lele24g0406 471 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 471 - -
Lele24g0406 471 FunFam heterogeneous nuclear ribonucleoprotein 1 107 226 - -
Lele24g0406 471 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Lele24g0406 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lele24g0406 471 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Lele24g0406 471 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lele24g0406 471 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lele24g0406 471 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lele24g0406 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 93 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0406 Lele-ChrLele24 2587380 2589330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0406 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.227 4.06e-10 60.1