LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele24g0374	ATGACAGGGAAAGAGATTACACAAAGTGGGAAGCATAGAAAAACAGAGAAAAGGTTGAAACTTTTTCAAGAGTTTCTTTTGGCTATGTATTGGGGAGGCATGTCTGGGAACAACATGGGTTGGGGTATGAATATGTTAGAGGAAGAAGGTTGGAGGAAGGGTCCTTGGACTGCTGAAGAAGACAGATTGCTTATTGAATATGTTAGGCTTCACGGTGAAGGCAGATGGAACTCCGTCTCTAGGCTTGCAGGATTGAAAAGAAATGGGAAAAGCTGCAGATTGAGGTGGGTGAATTATTTGAGGCCTGACCTGAAGAAGGGTCAGATAACACCTCAGGAAGAGAGCATCATTCTTGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTACCAGGAAGAACTGACAATGAGATTAAGAACTACTGGAGGACTCATTTCAAGAAGAAGGCGAAAAATTCTCCAGATTCTGCAGAAAAAGTGAAAAATCGCCTCATAAAGAGGCAACAATTTCAGCAGCAACAACAACAAATGCAGCAACAACAGCAGCAGCAGCAACAACAACTTCAATTCAACTTGGACATCAAAGGGATTATGGCTCTTCTGGAGGAAAATGATCATAGAGTAACTATGCCTAGCTTGTCTCAAATGAGGCAAGAAATGTATCAGAACAACATAGAAGAGCAAAATTGCTTCTACTCTATGCTCAATGGCAATGTCTCTGAACCAGAACCTTCAAATAATGATGATACTTTCTGGGATGGGCTGTGGAACTTGGATGATTTTCATGGAAATTTCAGTGCAGCAAGCAAAGAAAATCTACACAATTTAGTCGCTCCCTTCTGCTAG	861	0.4193	MTGKEITQSGKHRKTEKRLKLFQEFLLAMYWGGMSGNNMGWGMNMLEEEGWRKGPWTAEEDRLLIEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKNSPDSAEKVKNRLIKRQQFQQQQQQMQQQQQQQQQQLQFNLDIKGIMALLEENDHRVTMPSLSQMRQEMYQNNIEEQNCFYSMLNGNVSEPEPSNNDDTFWDGLWNLDDFHGNFSAASKENLHNLVAPFC	286

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele24g0374	286	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	52	100	IPR017930	-
	Lele24g0374	286	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	46	248	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Lele24g0374	286	SUPERFAMILY	Homeodomain-like	50	147	IPR009057	-
	Lele24g0374	286	CDD	SANT	55	100	IPR001005	-
	Lele24g0374	286	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	101	155	IPR017930	-
	Lele24g0374	286	Gene3D	-	53	105	-	-
	Lele24g0374	286	FunFam	MYB-related transcription factor	110	154	-	-
	Lele24g0374	286	Pfam	Myb-like DNA-binding domain	53	100	IPR001005	-
	Lele24g0374	286	Pfam	Myb-like DNA-binding domain	106	150	IPR001005	-
	Lele24g0374	286	ProSiteProfiles	Myb-like domain profile.	101	151	IPR001005	-
	Lele24g0374	286	FunFam	Myb transcription factor	53	105	-	-
	Lele24g0374	286	SMART	sant	52	102	IPR001005	-
	Lele24g0374	286	SMART	sant	105	153	IPR001005	-
	Lele24g0374	286	ProSiteProfiles	Myb-like domain profile.	48	100	IPR001005	-
	Lele24g0374	286	Coils	Coil	172	192	-	-
	Lele24g0374	286	CDD	SANT	110	151	IPR001005	-
	Lele24g0374	286	Gene3D	-	110	154	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele24g0374	Lele-ChrLele24	2416067	2417322	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele24g0374	48	286	MYB Transcription Factor Family	AT3G24310	59.459	3.20e-89	265

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele24g0374		Myb_DNA-binding	1.8e-16	CL0123