Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0337 ATGTTGGAAGCTGCTCTGCGAGTCCACTCTTCTCTATTCCTCCTCCATTCCTCAGCCTTTTCCTCTGCTAATTGTCTCTCCTTTTCGGTTTTTCATCTTTTGCTCTTTTTTCTCCTAGCCTTCCACATTCCCAGAAGTAGGATTGGCTCAGAGAAGGCGAAGATCGGAGTGAGAGGAGCGGCAATGGCAGAGACTTGGAAATATGTCAATGTCTGCTTGCTGGTGCTAGTAACGCTGTTCATTGGAGCCACCGCCAGAGTACAGATCTCTGAACTCAGGAATGTTGGAGCACAGAAATTGGAGAGCTTATCCAACACATCAATGGAGGCCAGAGCCAAACAGGCTGAGGAATTGAATGAGCGTGCTGTGGCTGCTGACCCGGAGGAGATTGTTTCCCATACAGTAATAATCATCCGGAACAGCACCGAAAGAAGAAAGTTGGGATTTTTCTCCTGTGGAACCGGTAATCCCATTGATGATTGCTGGCGTTGCGACCCCAACTGGCAACATAACAGGAAGCGCCTTGCAGACTGCGGCATTGGATTTGGCAGGAACGCCATTGGTGGTCGTGACGGTCGCTTCTATGTCGTCACTGACTCAGGAGACGATGACCCAGTCAACCCAAAGCCCGGCACTCTGCGCCACGCGGTGATCCAGGACAGCCCGCTCTGGATTGTATTCAAGCGTGACATGGTGATACAATTGAAGCAGGAGCTCATCGTGAACAGCTTCAAGACGATTGATGGGCGAGGAGCAAATGTGCACATTGCTAATGGAGGCTGCATCACCATCCAGTATGTCACAAATGTTATAATCCACGGTCTTCATATCCATGACTGCAAGCCCACAGGCAATGCCATGGTGAGAAGCTCCCCAACACACTATGGTTGGAGGACAATGGCGGACGGTGACGCCGTTTCCATATTTGGATCGAGTCACATTTGGGTCGACCACAATTCCCTCTCTCATTGTGCTGATGGCCTGGTCGACGCTGTCATGGGCTCTACTGCCATTACAATCTCCAACAACCACTTCACCCACCACAATGAGGTCATTCTGCTGGGCCACAGTGACTCTTACACAAGGGACAAGCAAATGCAAGTGACCATCGCTTACAACCATTTTGGAGAGGGACTCATCCAGAGGATGCCTAGGTGCAGGCACGGATATTTCCACGTAGTGAACAATGACTACACTCACTGGGAGATGTACGCGATTGGTGGGAGTGCAAACCCCACCATCAACAGCCAGGGGAACAGATACAATGCTCCACTTAATGCCTTCGCCAAGGAGGTGACAAAGCGAGTGGAGACAGCAGCAAGCCAGTGGAAGGGATGGAATTGGAGGTCAGAGGGAGATCTCATGCTGAACGGTGCTTATTTCACCCCATCTGGCGCCGGAGCCTCAGCCAGCTATGCCAGAGCCTCTAGCTTAGGAGCTAAGTCCTCTTCCATGGTCGGCACCATGACTTCTAATGCTGGGGCACTTGGCTGCAAAAAAGGCCGCCAGTGCTAG 1515 0.5142 MLEAALRVHSSLFLLHSSAFSSANCLSFSVFHLLLFFLLAFHIPRSRIGSEKAKIGVRGAAMAETWKYVNVCLLVLVTLFIGATARVQISELRNVGAQKLESLSNTSMEARAKQAEELNERAVAADPEEIVSHTVIIIRNSTERRKLGFFSCGTGNPIDDCWRCDPNWQHNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDSPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVETAASQWKGWNWRSEGDLMLNGAYFTPSGAGASASYARASSLGAKSSSMVGTMTSNAGALGCKKGRQC 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0337 504 SUPERFAMILY Pectin lyase-like 140 498 IPR011050 -
Lele24g0337 504 SMART amb_all 230 427 IPR002022 -
Lele24g0337 504 PRINTS Pollen allergen Amb family signature 302 323 IPR018082 -
Lele24g0337 504 PRINTS Pollen allergen Amb family signature 446 470 IPR018082 -
Lele24g0337 504 PRINTS Pollen allergen Amb family signature 404 423 IPR018082 -
Lele24g0337 504 PRINTS Pollen allergen Amb family signature 178 195 IPR018082 -
Lele24g0337 504 PRINTS Pollen allergen Amb family signature 475 498 IPR018082 -
Lele24g0337 504 PRINTS Pollen allergen Amb family signature 202 227 IPR018082 -
Lele24g0337 504 PRINTS Pollen allergen Amb family signature 238 254 IPR018082 -
Lele24g0337 504 PRINTS Pollen allergen Amb family signature 382 401 IPR018082 -
Lele24g0337 504 FunFam Pectate lyase 155 497 - -
Lele24g0337 504 Pfam Pectate lyase 236 419 IPR002022 -
Lele24g0337 504 Coils Coil 105 125 - -
Lele24g0337 504 PANTHER PECTATE LYASE 18-RELATED 118 502 IPR045032 GO:0030570
Lele24g0337 504 Gene3D - 155 497 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0337 Lele-ChrLele24 2187784 2191781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0337 88 504 Polysaccharide Lyase AT4G13710 78.673 0.0 714