Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0267 ATGGCTCAGCTACAGAGCCAACAGCAGCAGCAGCCACCCATTGATCATACCCAGAAGACCAAGGCTCTCATTTGTGCTCTCAACCTTGTCTCTGGTAACCTCCCTCTTCCTCCTGATCTTTTCAACACTGTTTCTTCCATCTATCACGGCGCCGAAGATGCTTCCAGTGATGACCGTGAATGCGAGGTCCCTGATGGGAGAGGGGGTAGAGCCGGATCTGAGGAGAAACAGGTGGATGCCCATGTTGACAAGGGTTTGGATAATACAGGAAATTCTAGGGAAGATTTGTTGACGGATCTTGAAGATGCACTAGTGAAACAACGACCAAGTTGTGTGTCAGGTTACAAATTGAAGGAAGGAAGGGAAAGGCGTTATAAAAGTCTGATTCAGCATCGGTTAAATGAACTTGAAGGATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTGTATGGACTGAAGCTAGCAGAGTTGTGGATGAAGGTTCGATCTGATGTGAGTGCTGAATACTGGCTCAATGTTAAATGTGCATATCCTGACAGGCAGTTGTTTGATTGGGGAATGATGCGGTTGCGTCGTCCTATGTATGGTGTTGGAGATCCGTTTGCCATGGATGCTGATGATCAGTTAAGGAAGAAAAGGGATGCAGAGAGATTGTCAAAATTAGAAGAGGAGGAAAAGAATCAGATAGAGACCAGAAAAAGAAAATTTTTTGCGGAAATACTTAATGCTGTCCGCGAGTTCCAATTACAAATTCAAGCTTCTTTGAAACGAAGAAAACAGAGAAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACACGGGCTGAGAAATTGAGGTTTCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAGAATGGTCAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAGTTGCTTGTGAATTTGGGAGCAGCTGTTCAACGTCAAAAGGACTCAAAACAAGAAGATGGCATTGAACCTTTGGAAGACTCGGACGCGGAACTACCAGAGTCAGATGGTTCGAAGAATGGAATATCTAAGGAATCACCTCCTGAGGAATATGCTGATATGATAGACTCTGATCATAATGGTGACACTAGTGATTTATTTGAAGTTCAACGGCAATACAACTCCGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCTTCTATTCTTCAAGGTGGAGAGTTAAGATCATACCAGTTAGAAGGGCTTCAGTGGATGCTTTCTTTGTTCAATAACAACCTAAATGGAATTTTGGCGGATGAAATGGGGCTTGGGAAGACAATACAAACAATTTCTTTGATAGCATATCTTATGGAGAACAAGGACGTGACCGGTCCCCACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCTCGACATGGGTTCCAAGCATTACAACTGTTCTTTATGATGGACGGCTGGATGAGCGAAAAGCAATGAAAGAGGAATTGTCAGGAGAGGGGAAGTTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAGGCGTTTCTCAAGAAAATTCACTGGTACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGAACTCTTGACTCTGGCTATAACATCCAACGTAGACTCCTGCTGACGGGCACCCCTATTCAGAACAGTTTGCAGGAATTGTGGTCCCTTCTTAATTTTCTCCTTCCAAGCATTTTTAACTCAGTTCAAAATTTTGAGGACTGGTTTAATGCCCCCTTTGCGGACAGAGTTGATGTCTCTCTAACAGATGAAGAACAGCTATTGATCATTCGCCGTCTTCATCAAGTAATAAGACCCTTCATATTAAGAAGGAAGAAAGATGAGGTGGAAAAATATCTTCCAGGGAAATCTCAGGTCATACTCAAATGTGATATGTCATCATGGCAGAAAGTATATTATCAACAAGTTACTGACTTGGGCAGAGTTGGCTTGGACAATGGCAGTGGGAAATCCAAGAGTCTACAGAATTTAACAATGCAACTCAGAAAGTGCTGTAACCATCCCTACCTCTTTGTGGGAGAACTTAATATGTGGAACAAGGATGAGATTGTCCGAGCATCAGGAAAGTTTGAACTCCTTGACCGTTTGCTACCAAAACTTCGTAGAACTGGGCACAGAGTCCTTCTGTTCTCACAAATGACGCGTCTCATGGATATTCTTGAAATTTATCTGCGGCTTCATGATTTCAAGTTTCTTAGACTTGATGGCTCAACAAAAACGGAGGAAAGAGGGACTCTACTGCGACAGTTCAATGCTCCTGACTCTCCGTACTTTATGTTTCTTTTGAGCACCCGTGCTGGAGGCCTTGGTCTAAACTTGCAAACAGCAGATACTGTTATAATTTTTGATAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGAGCTCATCGTATTGGACAAAAAAAAGAAGTTAGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATCCAGGCGGGACTTTTTAACACAACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGCAAAGGCACAAGCTCACTTGGGACTGATGTACCAAGTGAGAGAGAAATCAACCGCCTTGCAGCTCGATCAGATGAAGAATTTTGGTTGTTTGAGAGAATGGATGAAGAGAGAAGGCAAAAGGAGAACTACAGACCTCGTCTTATGGAAGAACATGAAGTGCCAGATTGGGTATACTCTGCAGCAGCTAACAAGGATGACAAGGTCAAAGGTAATGATTTTGGTAGTGTTAATGGAAAGCGGAAAAGAAAAGAGGTGGTATATGCTGATACTTTAAGTGATCTACAATGGATGAAAGCTGTGGAGAATGGGGAAGACATGTCAAAGTTTTCAGTGAAAGGGAGAAGAGACCACCTGCCATCGGACAGCAACACAATTGCCAGTGATAATGTTGGGGCGGAAGAAAGCTTTTCTGAATTACAAAATGAAAGCTTCTCCATGGCAAAAGAGAGATCGAATGAAGACTCTTTCCATGTGACCCCTGGTCCTACCCCAAAAAGACTCAGGCTTGAAGGAATAAACACACAGAAACATGAATACGAGGGCGTCAAAGGAAGTGGTTTGAATGAGCATATGTTTACCTGGAATACCCATAGAAAGAAAAGATCAAGCGGTCTTACTCAGAGCTCATCGTTTTCTGATTCTAGAGGGCAGAGTTCTAATGGAAGAGCAAATTGGAGCTGA 3375 0.4276 MAQLQSQQQQQPPIDHTQKTKALICALNLVSGNLPLPPDLFNTVSSIYHGAEDASSDDRECEVPDGRGGRAGSEEKQVDAHVDKGLDNTGNSREDLLTDLEDALVKQRPSCVSGYKLKEGRERRYKSLIQHRLNELEGLPSSRGEDLQTKCLLELYGLKLAELWMKVRSDVSAEYWLNVKCAYPDRQLFDWGMMRLRRPMYGVGDPFAMDADDQLRKKRDAERLSKLEEEEKNQIETRKRKFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQEDGIEPLEDSDAELPESDGSKNGISKESPPEEYADMIDSDHNGDTSDLFEVQRQYNSAIHSIQEKVTEQPSILQGGELRSYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKDVTGPHLIVAPKAVLPNWINEFSTWVPSITTVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWYYLIVDEGHRLKNHECALARTLDSGYNIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYQQVTDLGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGELNMWNKDEIVRASGKFELLDRLLPKLRRTGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGTLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRKGTSSLGTDVPSEREINRLAARSDEEFWLFERMDEERRQKENYRPRLMEEHEVPDWVYSAAANKDDKVKGNDFGSVNGKRKRKEVVYADTLSDLQWMKAVENGEDMSKFSVKGRRDHLPSDSNTIASDNVGAEESFSELQNESFSMAKERSNEDSFHVTPGPTPKRLRLEGINTQKHEYEGVKGSGLNEHMFTWNTHRKKRSSGLTQSSSFSDSRGQSSNGRANWS 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0267 1124 MobiDBLite consensus disorder prediction 1010 1034 - -
Lele24g0267 1124 SMART helicmild6 756 840 IPR001650 -
Lele24g0267 1124 Pfam SNF2-related domain 420 708 IPR000330 GO:0005524|GO:0140658
Lele24g0267 1124 MobiDBLite consensus disorder prediction 1091 1124 - -
Lele24g0267 1124 CDD SF2_C_SNF 718 851 - -
Lele24g0267 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 642 IPR027417 -
Lele24g0267 1124 MobiDBLite consensus disorder prediction 1045 1064 - -
Lele24g0267 1124 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 897 IPR001650 -
Lele24g0267 1124 MobiDBLite consensus disorder prediction 1096 1124 - -
Lele24g0267 1124 SMART ultradead3 413 606 IPR014001 -
Lele24g0267 1124 MobiDBLite consensus disorder prediction 52 78 - -
Lele24g0267 1124 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 429 595 IPR014001 -
Lele24g0267 1124 Coils Coil 211 241 - -
Lele24g0267 1124 MobiDBLite consensus disorder prediction 370 384 - -
Lele24g0267 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 894 IPR027417 -
Lele24g0267 1124 Gene3D - 385 641 IPR038718 -
Lele24g0267 1124 MobiDBLite consensus disorder prediction 334 384 - -
Lele24g0267 1124 Gene3D - 648 943 IPR027417 -
Lele24g0267 1124 FunFam Probable ATP-dependent DNA helicase CHR12 648 946 - -
Lele24g0267 1124 MobiDBLite consensus disorder prediction 1020 1034 - -
Lele24g0267 1124 Pfam Snf2-ATP coupling, chromatin remodelling complex 929 995 IPR029295 GO:0042393
Lele24g0267 1124 SMART SnAC_2 933 995 IPR029295 GO:0042393
Lele24g0267 1124 MobiDBLite consensus disorder prediction 51 78 - -
Lele24g0267 1124 FunFam Chromatin structure-remodeling complex protein SYD 408 651 - -
Lele24g0267 1124 MobiDBLite consensus disorder prediction 266 285 - -
Lele24g0267 1124 Pfam Helicase conserved C-terminal domain 727 840 IPR001650 -
Lele24g0267 1124 PANTHER SNF2/RAD54 HELICASE FAMILY 210 1031 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0267 Lele-ChrLele24 1685948 1693371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0267 399 867 RAD5 or RAD16-like Gene Family AT1G02670 26.998 2.30e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele24g0267 SNF2_N 1.7e-69 CL0023