Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0259 ATGGACGCCTTCTCACCTGCACAGCTTCTTCCCATTTCCTTTGAGAAGCCAACTCCTATTTGTTTTCTTTCTCACTCGCAGAATCATACCTTCTTCTTTTCCATGTATCACACCAACCCTGGTCTCCGCTTTATCACCAAGTTCAGAACTCCACAATCCGTTTTAAATACGTCTTCCTTGGCCCACAAAGCAGTTGATAAGGATGGAAGATATTGGATATTTCATGCCTACAGATGTCCAGAGGCAAGCATTGCCTTCTCTTTTATCTGGTTGCGATGGCATACTTCATGCCCAGGTTCTGGGAAGACGCTTGCATACCTACTTCTAATATTTTCTGTCATAAACACTGTAAAATGTGCTGTGCAAGCTCTTGTTGTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCCAAAGTTGCTAGGATGTTGGCAGCAAGTCCGACAGAGGTTGAAGAGGAGCACAAGTCATGTACCGTCATGGCTCTTTTAGACGGAGGAACATTGAGAAGACATAAGAGTTGGCTAAAGGCAGAGCCTCCAATGATAGTGGTAGCAACAGTGGGGAGTTTATGCCACATAATTGAAAAACAATTTTTAAAGCTTGAAACTGTGAGGGTGTTAGTGGTTGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTTAGTTCCCTTCGAAAGCTTTTAACTTTGTATTCATCGTGCAATAACCGTCAAACGGTTTTTGCCAGTGCATCTATACCACAACACAGACGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGATGTGATCCATATTCATGTCAGCCCAGTTGAGCCCATGCCACCACGCCTACATCATAGATTTGTAGTATGTCATAGGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATCTGATGCACCTGAGTCTGGTATCATATTTGCCAGTGAACAGTCTAAAAGGTCAAAACAGGCAGGAAATGTTCCATCGACGTCCCTTCTGATTGACTTTCTGAAGACTTCATATCGAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGACATGAATTTCAATTCACGAGCAGTTTCACTGTTGGAGATAAGGAAAGGTGGTGGCTATCTTCTTGTAGCAACAGATATAGCTTCAAGAGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCTAAGACTGCCGTAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACCGTTACCACTATCATTGTTCCAGAGGAGCGCTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCAATTGTGAAGAGCTTACTTTATAA 1356 0.4218 MDAFSPAQLLPISFEKPTPICFLSHSQNHTFFFSMYHTNPGLRFITKFRTPQSVLNTSSLAHKAVDKDGRYWIFHAYRCPEASIAFSFIWLRWHTSCPGSGKTLAYLLLIFSVINTVKCAVQALVVVPTRELGMQVAKVARMLAASPTEVEEEHKSCTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIEKQFLKLETVRVLVVDEVDFIFNSSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVIHIHVSPVEPMPPRLHHRFVVCHRNKKQQTLLSLIQSDAPESGIIFASEQSKRSKQAGNVPSTSLLIDFLKTSYRGSLDILLLEEDMNFNSRAVSLLEIRKGGGYLLVATDIASRGVDLPEMSHIYNFDLPKTAVDYLHRAGRTCRKPFSDMKCTVTTIIVPEERFVLQKYENELMFNCEELTL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0259 451 Gene3D - 279 449 IPR027417 -
Lele24g0259 451 Pfam Helicase conserved C-terminal domain 294 413 IPR001650 -
Lele24g0259 451 SMART helicmild6 331 415 IPR001650 -
Lele24g0259 451 SMART ultradead3 76 285 IPR014001 -
Lele24g0259 451 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 98 442 - -
Lele24g0259 451 CDD DEADc 99 258 - -
Lele24g0259 451 CDD SF2_C_DEAD 282 413 - -
Lele24g0259 451 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 451 IPR001650 -
Lele24g0259 451 Gene3D - 94 261 IPR027417 -
Lele24g0259 451 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 265 IPR014001 -
Lele24g0259 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 418 IPR027417 -
Lele24g0259 451 Pfam DEAD/DEAH box helicase 99 249 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0259 Lele-ChrLele24 1629593 1633137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0259 99 434 Eukaryotic Initiation Factors Gene Family AT3G13920 25.220 4.35e-23 99.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0260 21 1707277 1710462 Lele24g0259 24 1629593 1633137 hybridization
Lele22g0272 22 1628769 1632280 Lele24g0259 24 1629593 1633137 hybridization