Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0238 ATGAATATCGTCTCCCTTTCGGTCTGCCAACAAGTACGGCCCTTAGTGAATTTCCAAAGGGGACTCCCCATGGAGCCTTTCTTCCGCCACCCCCGCAAAGACAAGGCCGTCGTCATACTCGGCGCCACCGGCACCGGCAAGTCCAGGCTCGCCATCGACCTCGCCACCTGCTTCCCCCCCGCAGAGATTGTCAACTCCGACAAAATGCAAGTCTACCGAGGCCTCGACATCACCACCAACAAGGTCACCGAAGAAGAGTGTTGCGGTATCCTGCACCACCTCCTTGGAATTGCTGATCCTCACTCTAATTTCACCGCTGATGACTTCACCCGCCATGCCTCCTCCGCCATTGATTCCATCGTCAACCGAGATGGCCTTCCCATCATCGCCGGCGGCTCCAATTCCTATATTGAAGCCATTGTCGAAGACGACGCTGCGTTCCGGTTGAAGTACGAGTGTTGCGTTCTCTGGGTGGACGTGTCTGAGCACGTCCTCGATTCATTCCTCTCGAAGCGGGTCGATCGGATGATCGAAGCGGGTCAGGTCGAAGAGGTCCGTCAGTTTTTTGACCCGACCGCGGATTACACAATAGGAATCAGAAAAGCCATTGGAGTACCTGAATTTGATGAATTCCTTCCAACAGAAGCTACGGCTGATGAGCGGACCAAGAAGAGGTTACTAGAGGATGCCATTGCGAAGATTAGAGCCAACAATTGCTCACTTGCCCGTCGACAGGTTCAGAAGATTCGTCGGCTTTACAACATGTGGAAGCGAAGGACGTATCGCCTCGACGCCACCGAGGTGTTCAAGAAATCGGGCGACGAGGCAGAGGAACTGTGGGAGACTCACGTGCTTGCCAAGAGCCAGAGGATTGTACACAAGTTCCTGTACGAGGATAGTCCGGTGGTTCCGGCCACCCCAGTAATGTCCTCGGTGGCACCATATTCTCAGCCTAAGCAGGTGGCGACACCTCCGATAAGACTTGCTATATAA 993 0.5418 MNIVSLSVCQQVRPLVNFQRGLPMEPFFRHPRKDKAVVILGATGTGKSRLAIDLATCFPPAEIVNSDKMQVYRGLDITTNKVTEEECCGILHHLLGIADPHSNFTADDFTRHASSAIDSIVNRDGLPIIAGGSNSYIEAIVEDDAAFRLKYECCVLWVDVSEHVLDSFLSKRVDRMIEAGQVEEVRQFFDPTADYTIGIRKAIGVPEFDEFLPTEATADERTKKRLLEDAIAKIRANNCSLARRQVQKIRRLYNMWKRRTYRLDATEVFKKSGDEAEELWETHVLAKSQRIVHKFLYEDSPVVPATPVMSSVAPYSQPKQVATPPIRLAI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0238 330 Pfam IPP transferase 70 143 - -
Lele24g0238 330 Pfam IPP transferase 150 251 - -
Lele24g0238 330 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 260 - -
Lele24g0238 330 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 296 IPR039657 -
Lele24g0238 330 Gene3D - 33 296 IPR027417 -
Lele24g0238 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 144 IPR027417 -
Lele24g0238 330 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0238 Lele-ChrLele24 1512826 1513818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0238 150 296 C2H2 Transcription Factor Family AT2G27760 30.857 5.97e-17 79.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0240 21 1581130 1582116 Lele24g0238 24 1512826 1513818 hybridization
Lele22g0256 22 1516094 1517086 Lele24g0238 24 1512826 1513818 hybridization