LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele24g0201	ATGGACAACGATCGGCGTTCCTCGAGCGCCGAATCCGTTGAATTAGAAAAGGGGGACTCAAAAGAGAAGAAGCCTTCTTCAAAAGGCAGGCGGGCTCGGACTGGGTATTCTGATTCCATTAGAGAATTGGACTTGAATTCTTTATATATTAAAGAACGAGGCGCACCTGAGTGGCCTGCTATGTCTGAGGACTACCGGAGAAGTTTAGAATATGAAATTCCTTCTTCCAATGTCAGCACTTCTGATTCTGAGTGTCCACCAGATGCTGCAAACAGTGCTCAGTGGCGTGGCCTGCTTAAATTCGTGAAAAAAGGAGGATCCCACATGCGTTTCGCTCATCCACCTAAAAATATTCCCAAACTCACTCGAAGAACAGTTAAACGTATCAAGGAAGAACTCATGCCTGGTCCACATTCTTCAGTTCCATCCCCATCCCTTGATCCAGATTTTTACTGCTTCAAGTCTTCCTGGATAAACTTTTCTTTTGCACAGCTCAACACTGCCACCAACAACTTTAGTGATGATTTGTTGATTGGGAAGGGAGGTTATGCTGAGGTTTACAAAGGAAAAATGGAAGATGGGACATATGTTGCCATCAAACGGCTGATGAAAGGAAGCCAAGAAGAAATGACAGCTGATTTCTTGTCTGAACTTGGTATTATAGTTCATGTTGATCATCCCAATATTGCCAGATTGATTGGTTATGGTGTGGAAGGGGGCATGTTTCTTGTTCTTCAGTTATCTCCGCACGGCAGCCTCGCTGGCATACTTTATGGACCTCGAGAGAGACTGGATTGGAACATAAGATTTAAGGTTGCACTAGGGACTGCTGAGGGCCTTCAATATCTGCATGAGGGATGTCAAAGAAGGATCATTCACAGAGATATCAAGGCTGCTAATATTCTGCTGTCAGAGGATTTTGAGCCTCAGGTGTCTGATTTTGGGCTTGCAAAGTGGTTGCCTGATCAATGGACTCACCATACTGTGGACAAAATTGAAGGCACATTTGGTTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAGACCGATGTCTATGCTTACGGAGTTCTATTATTGGAGCTCATTACAGGAAGACAGGCTTTAGATGGCTCTCAGAAAAGTTTGGTGATGTGGGCAAAACCGTTGCTATCTGTAGATAAAATCAAAGAGCTCGTTGATCCATGTCTGACTGGCGCTTATGATGAAGAACAGATGAAAATTGTTGTAATGACAGCTTCCTTGTGTATAGAGCAGTGTTCAGTGGAGCGACCACATATGAGCGAGGTTTTGAAGACTCTGAAAGGAGACGAAGAGGGCTTGAAGTTCATAATGAAGCGCCAGAAGTCAAAACTGAGAAGGACGTATTCTGTAGAGCTGCTAGACGCAGAGGATTACAATTCAACAAAGTATTTGAGTGACATGACTCGAGAGACGAGTCCTGAGATCTCTGATTCTTTGAACGAAGAAAACATTCTGAAGTAG	1494	0.4364	MDNDRRSSSAESVELEKGDSKEKKPSSKGRRARTGYSDSIRELDLNSLYIKERGAPEWPAMSEDYRRSLEYEIPSSNVSTSDSECPPDAANSAQWRGLLKFVKKGGSHMRFAHPPKNIPKLTRRTVKRIKEELMPGPHSSVPSPSLDPDFYCFKSSWINFSFAQLNTATNNFSDDLLIGKGGYAEVYKGKMEDGTYVAIKRLMKGSQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLAGILYGPRERLDWNIRFKVALGTAEGLQYLHEGCQRRIIHRDIKAANILLSEDFEPQVSDFGLAKWLPDQWTHHTVDKIEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDGSQKSLVMWAKPLLSVDKIKELVDPCLTGAYDEEQMKIVVMTASLCIEQCSVERPHMSEVLKTLKGDEEGLKFIMKRQKSKLRRTYSVELLDAEDYNSTKYLSDMTRETSPEISDSLNEENILK	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele24g0201	497	MobiDBLite	consensus disorder prediction	477	497	-	-
	Lele24g0201	497	Gene3D	Phosphorylase Kinase; domain 1	145	246	-	-
	Lele24g0201	497	SMART	serkin_6	172	412	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele24g0201	497	PANTHER	OS08G0249100 PROTEIN	33	471	-	-
	Lele24g0201	497	MobiDBLite	consensus disorder prediction	1	38	-	-
	Lele24g0201	497	Gene3D	Transferase(Phosphotransferase) domain 1	249	461	-	-
	Lele24g0201	497	FunFam	Receptor-like cytosolic serine/threonine-protein kinase RBK1	148	247	-	-
	Lele24g0201	497	ProSitePatterns	Protein kinases ATP-binding region signature.	178	200	IPR017441	GO:0005524
	Lele24g0201	497	ProSiteProfiles	Protein kinase domain profile.	172	447	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele24g0201	497	Pfam	Protein tyrosine and serine/threonine kinase	178	435	IPR001245	GO:0004672\|GO:0006468
	Lele24g0201	497	SUPERFAMILY	Protein kinase-like (PK-like)	160	464	IPR011009	-
	Lele24g0201	497	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	249	452	-	-
	Lele24g0201	497	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	291	303	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele24g0201	Lele-ChrLele24	1309667	1312454	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele24g0201	146	439	Receptor kinase-like Gene Family	AT1G53420	42.053	2.47e-70	239

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Lele24g0201		PK_Tyr_Ser-Thr	8.2e-40	CL0016