Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0176 ATGCTCCCTCAGCTGTACCCGAAGCTTAGCCTCGGTGAAGTAACGACCCTCAGTTGCGGAGCTTGTTCGGCACTCTCTGTCCCCCTTCCCGTTCAAACTCGATACTTTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTACGATTATTTGATGAAGAAAAAATTGCATAATACTGCCAAGTCATTCATGACTGAAGGAAAGGTTGCGCCAGATCCAGTAGCAATTGATGCTCCTGGGGGTTTTCTTTTCGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCGAGGACGAATGAGAAACATTCTGAGTCTGCTGCAGCGTATTTGGAGGCTCAACAGACTAAAGCAAAAGAGCAGCAGCAGCTGCAAATGCAGCAGTTGCAACTTATGCGTCAAGCTCAGCTTCAAAGAAGGGATCCTAATCATCCTCCTCTTGGTGGTACTGTAAATGCTATATCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCTGCAAAAATGTACGAGGAACGGATGAAACACTCTAACCCAATGGATACTGAGACATCCCAACCACTTATAGATGCTAGAATGGCCCTTTTGAAGTCAACAACAAGTCATCCTGGTCAGATGGTTCAAGGCAATACTGGAAGTGTGACTGCAGCTTTGCAGCACATGCAGGCTCGAAATCAGCAGCCTCCTGTAATCACTGAAGTCAACATGGGCACGATGCAAAGATCTTCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGAGCAATGCAGTCAAAACCGGGAATAGTAAATCCAGGACTGAATCCAGGAGTTGGTGGTCTCACATTGAAAGGATGGCCTTTAACTGGAATAGATCAAATTCGGCCAGGTTTAGGAGCACAAGTTCAAAAACCTCTCCTTCAGAGTGCAAATCAGTTCCAGCTTTTGCCCCAACAACAACAACAACAACTCTTGGCACAGGTTCAGGCACAAGGAAATATTACCAGTTCACCAATGTATGCAGATATGGATCCTCAACGGTTGAGGGGATTAGCTCGGGGTAGTTTGAATGCAAAAGATGGCCAGCCTATTGCAAATGATGGATCAGTTGGTTCTCCCATGCAATCCACTTCATCTAAGATGAACATGCCACAGATGCAACAATCTACCACTCAGCAACAGCAGGATCCATTGCACCCACAGCAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAACAGCACTGGTACAGGAAACACGATCGGCCCTTCCAATTCCCAGCCATCAACCCCATCTACTCATACTCCTTGTGATGGTGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAGGCTTGATCATGTATGGTGCTGATGGCACAGGTGGTCTTGCATCGTCAACTAATCAACTGTTGCAGGATGACATGGAACGTTTTGGAGATGTTGGTTCCTTAGATGATAATGTGGAGTCATTTCTTTCACACGATGATGGTGATGGAAGAGATTTGTTTGGCACCTTGAAACGGAACACTTCTGAGCACACAACAGATGCTTCAAAAGGCTTTTCCTTTAGTGAAGTCGGCTCCATACGCAAGAGCAATGGCAAAGTCGTTTGCTGTCACTTCTCGTCAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGAGAGCACTTCAGAGGAACACACTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCATCTCAGCTTGCAACTTCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTGCAGATCCAAACTACTTTTGTTTGCAGACATATGCAGGCCATACCTCTCATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGCGATGCCAACAGTGAAATTCGCTTTTGGAATATTAGTCAATATTCCTGCACTCGCGTTTCCAAGGGAGGCTCTGCACAGGTAAGGTTTCAGCCAAGAATAGGACACCTTCTGGCTGCAGCGGCTGGTAATGTTGTATCCCTCTACGACATTGAGACTGACAGGCTGGTTCAGTCATTACAGGGGCACACTACAGATGTGCATTCTGTTTGTTGGGATACCAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAGAGTGTGGTCATTGGTCTCTGGGGACTGCATTCACGAGCTTAGCTCCAGTGGGAACATGTTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCAGAGAATAAATGCATGACAATACCCGCTCACGAGTGCGTGATATCGGCTTTAGCACAATCACCAGTGTCAGGAATGGTTGCTTCTGCAAGTCATGACAAATCGGTCAAGATCTGGAAATAA 2460 0.4577 MLPQLYPKLSLGEVTTLSCGACSALSVPLPVQTRYFNWEADKMLDVYIYDYLMKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQQTKAKEQQQLQMQQLQLMRQAQLQRRDPNHPPLGGTVNAISSEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLIDARMALLKSTTSHPGQMVQGNTGSVTAALQHMQARNQQPPVITEVNMGTMQRSSLPMDPSSIYGQGAMQSKPGIVNPGLNPGVGGLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNITSSPMYADMDPQRLRGLARGSLNAKDGQPIANDGSVGSPMQSTSSKMNMPQMQQSTTQQQQDPLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKGLIMYGADGTGGLASSTNQLLQDDMERFGDVGSLDDNVESFLSHDDGDGRDLFGTLKRNTSEHTTDASKGFSFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTESTSEEHTLIITDVRFRPNSSQLATSSFDTTVRLWDAADPNYFCLQTYAGHTSHVMSLDFHPKKNDLFCSCDANSEIRFWNISQYSCTRVSKGGSAQVRFQPRIGHLLAAAAGNVVSLYDIETDRLVQSLQGHTTDVHSVCWDTNGDYLASVSQESVRVWSLVSGDCIHELSSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPVSGMVASASHDKSVKIWK 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0176 819 PRINTS G protein beta WD-40 repeat signature 556 570 IPR020472 -
Lele24g0176 819 PRINTS G protein beta WD-40 repeat signature 806 819 IPR020472 -
Lele24g0176 819 PRINTS G protein beta WD-40 repeat signature 598 612 IPR020472 -
Lele24g0176 819 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 579 611 - -
Lele24g0176 819 SMART Lish 40 72 IPR006594 GO:0005515
Lele24g0176 819 ProSiteProfiles Trp-Asp (WD) repeats profile. 787 819 IPR001680 GO:0005515
Lele24g0176 819 MobiDBLite consensus disorder prediction 365 440 - -
Lele24g0176 819 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 787 819 - -
Lele24g0176 819 Coils Coil 110 139 - -
Lele24g0176 819 ProSitePatterns Trp-Asp (WD) repeats signature. 556 570 IPR019775 -
Lele24g0176 819 Gene3D - 673 819 IPR015943 GO:0005515
Lele24g0176 819 Gene3D - 516 672 IPR015943 GO:0005515
Lele24g0176 819 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 611 IPR001680 GO:0005515
Lele24g0176 819 SMART WD40_4 616 656 IPR001680 GO:0005515
Lele24g0176 819 SMART WD40_4 780 819 IPR001680 GO:0005515
Lele24g0176 819 SMART WD40_4 572 611 IPR001680 GO:0005515
Lele24g0176 819 SMART WD40_4 698 736 IPR001680 GO:0005515
Lele24g0176 819 SMART WD40_4 530 569 IPR001680 GO:0005515
Lele24g0176 819 SMART WD40_4 739 778 IPR001680 GO:0005515
Lele24g0176 819 SMART WD40_4 659 695 IPR001680 GO:0005515
Lele24g0176 819 Pfam WD domain, G-beta repeat 581 611 IPR001680 GO:0005515
Lele24g0176 819 Pfam WD domain, G-beta repeat 619 656 IPR001680 GO:0005515
Lele24g0176 819 Pfam WD domain, G-beta repeat 701 736 IPR001680 GO:0005515
Lele24g0176 819 Pfam WD domain, G-beta repeat 785 819 IPR001680 GO:0005515
Lele24g0176 819 Pfam WD domain, G-beta repeat 542 569 IPR001680 GO:0005515
Lele24g0176 819 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 572 - -
Lele24g0176 819 ProSiteProfiles Trp-Asp (WD) repeats profile. 623 665 IPR001680 GO:0005515
Lele24g0176 819 ProSiteProfiles Trp-Asp (WD) repeats profile. 705 745 IPR001680 GO:0005515
Lele24g0176 819 Pfam LisH 42 68 IPR006594 GO:0005515
Lele24g0176 819 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 578 IPR001680 GO:0005515
Lele24g0176 819 SUPERFAMILY WD40 repeat-like 531 819 IPR036322 GO:0005515
Lele24g0176 819 CDD WD40 533 819 - -
Lele24g0176 819 ProSiteProfiles LIS1 homology (LisH) motif profile. 40 72 IPR006594 GO:0005515
Lele24g0176 819 MobiDBLite consensus disorder prediction 353 443 - -
Lele24g0176 819 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 38 819 IPR044716 GO:0003714
Lele24g0176 819 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 623 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0176 Lele-ChrLele24 1140539 1147275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0176 555 779 U-box Gene Family AT2G33340 28.870 1.36e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lele24g0176 WD40 0.0041 CL0186