Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0151 ATGGCATCAACATCTGGTGCCCCCAAGATGCCATTCCCTGTGACAGAGGGAGCTCTGCAGTATCGACCGTATCCTGCTCCTCTTGCAAAATTTGATGATATCGTGGCTGATCGCAGGCTTTTTATGCATACCTTGGAGAAGCTCCACAGTACTATGCGTACCAAGTTCATGATTCCCATTATCGGGGGAAGAGAACTAGATTTGCATCGGCTTTTCTTGGAAGTGACTTCTCGTGGAGGCATTGAGAAAATTATAAGGGAGAGAAGATGGAAAGAAATAACTGCTGTTTTCCACTTTCCATCTACAGCCACAAATGCTTCTTTTGTGTTGCGGAAGTACTATTCTCAATTGCTTTACCACTATGAACAAATATACTATTTTAAGGCCCCAGGATGGCATGACGCTTCTGATGCTGCGCAGAGTCCATCAACTGTGCCGGTTCCTGCTCCAAGAATGCAGCAATTTTTGCCTCCCCCAGTTAATGCCCCTGAATTGCCTGAAGGGACTTCAGCTTCTTCTGTAGGAACTCCAGTGATTGGGGTAATTGATGGAAAATTCGAAAGTGGGTATCTTGTTACTGTCACTGTGGGTCTAGAGAAACTTAAAGGTGTCCTATATCAGGCTCCACAAAACTCTGCTTTGCCAGCAATGCTGCAACATAGTAGTGTTCCAGTCAGTAACAGCAATACTTCATCAGCTGCTTTGGGCGTCCATCGTCACCGACGCAAGAAGTCTGAGATAAAAAAGAGAGATCCTGATCACCCCAAACCCAATCGAAGCGGGTACAATTTCTTCTTTGCAGAGCAGCATGCAAGATTGAAACCACTTCACCATGGGAAGGACCGTGAAATCAGTAAGATTATTGGTGAACTCTGGAACAAATTAATAGAGCCGGAGAAATCAGTTTATCAAGAGAAGGCTCTTAAGGATAAAGAGAGGTACCAAGCTGAAATGGAGAATTATAGGGAGAAGCTGAAAACAGGCCAGGGTATAGGCGATGGCATGCTGCTACAACAAGAAGTTCCTGATAAGGATATGATGGGTGCCGACGGAAAAGTGGATGAAACTGAGGGAGTAGAATTTTCTCAAACACAAGATGAGAGTTCTGGTGAAAGTGACTACGAAGATGATAAAGTTACAGAGCATAATATGGACATTGACGTGTCTCATGGAATGATAGGAGAGGGTGCTGAATCTAGCTATCTGGGTGCAGAGAAACAATCAAAGGAGAAAGAAGGGAATGATGATGGAGATCAACAAAATGCTCAAAAGATGGATGAGAGCTCAAGCATGATGGCTATTTAG 1305 0.4414 MASTSGAPKMPFPVTEGALQYRPYPAPLAKFDDIVADRRLFMHTLEKLHSTMRTKFMIPIIGGRELDLHRLFLEVTSRGGIEKIIRERRWKEITAVFHFPSTATNASFVLRKYYSQLLYHYEQIYYFKAPGWHDASDAAQSPSTVPVPAPRMQQFLPPPVNAPELPEGTSASSVGTPVIGVIDGKFESGYLVTVTVGLEKLKGVLYQAPQNSALPAMLQHSSVPVSNSNTSSAALGVHRHRRKKSEIKKRDPDHPKPNRSGYNFFFAEQHARLKPLHHGKDREISKIIGELWNKLIEPEKSVYQEKALKDKERYQAEMENYREKLKTGQGIGDGMLLQQEVPDKDMMGADGKVDETEGVEFSQTQDESSGESDYEDDKVTEHNMDIDVSHGMIGEGAESSYLGAEKQSKEKEGNDDGDQQNAQKMDESSSMMAI 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0151 434 SUPERFAMILY ARID-like 34 134 IPR036431 GO:0003677
Lele24g0151 434 FunFam High mobility group B protein 15 237 332 - -
Lele24g0151 434 SMART hmgende2 254 323 IPR009071 -
Lele24g0151 434 Coils Coil 304 331 - -
Lele24g0151 434 SUPERFAMILY HMG-box 242 326 IPR036910 -
Lele24g0151 434 SMART bright_3 36 127 IPR001606 GO:0003677
Lele24g0151 434 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 255 322 IPR009071 -
Lele24g0151 434 CDD HMGB-UBF_HMG-box 255 319 - -
Lele24g0151 434 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Lele24g0151 434 FunFam High mobility group B protein 15 29 143 - -
Lele24g0151 434 MobiDBLite consensus disorder prediction 356 434 - -
Lele24g0151 434 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Lele24g0151 434 Pfam HMG (high mobility group) box 255 322 IPR009071 -
Lele24g0151 434 SMART ARID_2 32 122 - -
Lele24g0151 434 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 367 - -
Lele24g0151 434 Pfam ARID/BRIGHT DNA binding domain 38 122 IPR001606 GO:0003677
Lele24g0151 434 Gene3D High mobility group box domain 239 331 IPR036910 -
Lele24g0151 434 Gene3D - 22 140 IPR036431 GO:0003677
Lele24g0151 434 MobiDBLite consensus disorder prediction 404 422 - -
Lele24g0151 434 MobiDBLite consensus disorder prediction 224 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0151 Lele-ChrLele24 952409 955008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0151 1 350 ARID Transcription Factor Family AT1G04880 57.027 6.81e-122 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele24g0151 ARID 1.1e-17 CL0123