Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0083 ATGGACGGAGCGCCACCTTCTTCCACCTGCTCCGGAGCTGGAGGCGGCGGAACTGGAGGTCCAGCACCTTTTCTCATCAAGACCTATGAAATGGTCGACGATTCTTCTACCGACGATACTGTATCGTGGAGCCCCACCAACAACAGCTTCGTCGTCTGGAATCCCCCTGAGTTCGCTCGTCATCTTCTTCCTACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAACTCAATACCTACGGGTTGTCCCTTATTGGCTACCCTTCTGCTCAAGTGCTGAATAATACTTTAATTACGGACAGTACTTTCTGTCAGTTTCAAAAGTTAATGAATTTGATGGTTTTATCTGCCCCATTTTTTTATTGCTTGTACAATTCAAGAGTGCAGAATCTGGGAAGGCTTGAACTGGGATTTCGAAAAATACATCCTGAGCGATGGGAGTTCGCTAATGATGATTTTGTAAAAGATCAAAAGCATCTTCTCAAGAATATTCACCGCAGGAAACCTATCCACAGTCACAGCCATCCTCCAGGCTCCGTTGTGGACCCAGAACGGGCAGCATTTGAGGAAGAAATAGAGAAACTTACGCATGAGAAATCTGCTCTTGAGTCCAACATCGTCAGATTTAAACAACACTTAGCTGTAAAGCTTCAGCTGGAAGATCTATTGCAGCGATTAGACAGTATGGAGAAGAGACAGAAGAATTTGCTCAACTTCTTTGAAAAGTCTCTTCAGAATCCTTCTTTTGTTGAACATGTTTCTCGGAAACTTGATTGCATGGATTTATCGGCATATAATAAGAAAAGAAGATTACCTCAGGCCGATCACTTGCAGCCAGTAGGTGAAAGTAACTTAATTGAAAATCATAGCAATTTTAGAACAGAATTTGGCACTGTCTTCCACCAAGATTTCTCAAATAAACTCAGATTGGAGCTATCGCCAGCCGTTTCAGATATGAATTTGGTATCACGTAGCACTCAAAGTTCCAATGAAGATGGGGAAAATCCACAGAAGAGGCTATCTGAAGGAACGCCCAAAGGAGTGAAGACAAGAACAACTCTTGCATTTGCGCCTGAAACATTAGAGCTTGCAGATACTGGTGCATCTTTTTCTTTCAAGATGGATTCATGCCCATCACAAAGAGCAACAACTGCTGAGAGCACAAAACTGCACTCTCTGCATCTAAGCAATGAAGAAGGTGACAGTCATATATCCTGCCATCTAAATTTGACTCTGGCATCTTCTCCTTTGCAAGTTAACAGATATTCATACTCAACTAGATCACCTCAAATAGACTGTCAGGAGGTAGGCAAGTTGGCAGAATCAAGATTTCAAGAAAACGATAAATATTCTAGCAGTGGAGTTCCTTCGACCAGAAATCAAGTTCATGAGGTTGCCAAGTTAACTTCCTCACAGTCGAAGGAGACTCCAAGCAGCGACCAAGTGCCACCGGCTGCTCCAGCCAGAGTAAATGACGTGTTCTGGGAACAGTTCCTTACAGAAAGACCAGGTTGTTCAGACAGCGAGGAGGCAATATCCAACTATAGAGCAAATCCATATGAAGAGCAAGACGAAGGGCGGTCAATTCCTGGAATCTCCAGAGATGTTAAGAATATGGATCGGCTCAGACTTTGA 1641 0.4345 MDGAPPSSTCSGAGGGGTGGPAPFLIKTYEMVDDSSTDDTVSWSPTNNSFVVWNPPEFARHLLPTYFKHNNFSSFIRQLNTYGLSLIGYPSAQVLNNTLITDSTFCQFQKLMNLMVLSAPFFYCLYNSRVQNLGRLELGFRKIHPERWEFANDDFVKDQKHLLKNIHRRKPIHSHSHPPGSVVDPERAAFEEEIEKLTHEKSALESNIVRFKQHLAVKLQLEDLLQRLDSMEKRQKNLLNFFEKSLQNPSFVEHVSRKLDCMDLSAYNKKRRLPQADHLQPVGESNLIENHSNFRTEFGTVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGENPQKRLSEGTPKGVKTRTTLAFAPETLELADTGASFSFKMDSCPSQRATTAESTKLHSLHLSNEEGDSHISCHLNLTLASSPLQVNRYSYSTRSPQIDCQEVGKLAESRFQENDKYSSSGVPSTRNQVHEVAKLTSSQSKETPSSDQVPPAAPARVNDVFWEQFLTERPGCSDSEEAISNYRANPYEEQDEGRSIPGISRDVKNMDRLRL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0083 546 Gene3D - 19 170 IPR036388 -
Lele24g0083 546 SMART hsfneu3 20 169 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele24g0083 546 MobiDBLite consensus disorder prediction 448 482 - -
Lele24g0083 546 Coils Coil 187 241 - -
Lele24g0083 546 MobiDBLite consensus disorder prediction 522 546 - -
Lele24g0083 546 MobiDBLite consensus disorder prediction 324 351 - -
Lele24g0083 546 Pfam HSF-type DNA-binding 24 169 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele24g0083 546 MobiDBLite consensus disorder prediction 447 488 - -
Lele24g0083 546 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele24g0083 546 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele24g0083 546 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele24g0083 546 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 333 IPR027725 -
Lele24g0083 546 MobiDBLite consensus disorder prediction 507 546 - -
Lele24g0083 546 SUPERFAMILY "Winged helix" DNA-binding domain 20 169 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0083 Lele-ChrLele24 547087 550272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0083 1 546 HSF AT4G13980 47.283 3.89e-148 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele24g0083 HSF_DNA-bind 4.7e-28 CL0123