Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0077 ATGTTGGTTCTGTTCGTTGTTTCAGGTGATAACCTTGTTATAATGGCATTGTGCAATAAACTTGGGAATCTATTAAGGCAGGGTGCTGCTCAAAACAGACAAGTACCAGTTGCATCAATGCTGAATTATGTTCGCTGCATGTCATCCTCCAAGCTTTTCATTGGCGGCCTTTCTTATGGAGTTGATGATCAATCTCTCAGGGATGCATTTGCCGGCTTCGGAGATGTGGTTGAGGTTTATGAAATTGTCTTCTTGCGGGCATGGGTAATTGGATTTGGAGCTGGTGAGATAAGTGAGTGCTTCATTTTTTTCTGAGGTTTTGGATTTGTCAATTTCTCCAGTGATGAATCTGCAAGTTCTGCTATTTCTGCAATGGATGGGCAGGATTTAGGTGGGAGAAACATTCGTGTGAGCTATGCAACTGACAGACCACCTAGACCTCGATCCTTTGGTGGTGGCGGTGGTGGTTATGGTGGAAATGGTGGTGGTTTTGACAATCCATCCTTTTAA 510 0.4373 MLVLFVVSGDNLVIMALCNKLGNLLRQGAAQNRQVPVASMLNYVRCMSSSKLFIGGLSYGVDDQSLRDAFAGFGDVVEVYEIVFLRAWVIGFGAGEISECFIFFXGFGFVNFSSDESASSAISAMDGQDLGGRNIRVSYATDRPPRPRSFGGGGGGYGGNGGGFDNPSF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0077 169 Gene3D - 45 167 IPR012677 -
Lele24g0077 169 MobiDBLite consensus disorder prediction 145 169 - -
Lele24g0077 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 142 IPR000504 GO:0003723
Lele24g0077 169 SUPERFAMILY RNA-binding domain, RBD 45 165 IPR035979 GO:0003676
Lele24g0077 169 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 106 160 - -
Lele24g0077 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 136 IPR000504 GO:0003723
Lele24g0077 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 79 IPR000504 GO:0003723
Lele24g0077 169 SMART rrm1_1 51 138 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0077 Lele-ChrLele24 508343 509574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0077 49 153 Eukaryotic Initiation Factors Gene Family AT4G34110 31.481 1.55e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0081 21 539406 541151 Lele24g0077 24 508343 509574 hybridization
Lele22g0082 22 489710 491026 Lele24g0077 24 508343 509574 hybridization