Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0051 ATGGCGGGCGTATCCCTCCAGTGCGGTGACTGTGGAGCGCTATTGAGGTCCGTACAAGAAGCTCAGGAGCACGCAGAGCTCACCTCCCACTCTAACTTCTCCGAATCGACTGAAGCTGTTCTCAACCTTGTTTGCTCCACTTGTGGCAAGCCATGCCGATCCAAAACCGAGAGTGATTTGCATACAAAAAGAACTGGGCATAGTGATTTTGTTGATAAGACATCTGAGGCAACGAAACCAATAAGTTTGGAGGCTCCAAAGGTGGATGCAATGTCTGATGAAGTTGTCACGGCAACCACTGACCAACCTGATGATATGGTTGTTCCTGAGGTTGACAAAAAGGTGCTTGAGGAACTTGAATCAATGGGTTTTTCAACGGGACGTGCAACACGCGCACTTCATTATTCTGGTAATGCTAGCCTGGAGGCTGCTGTGAATTGGGTAGTAGAGCATGAGAATGACCCTGACATAGATCAGATGCCCTTGATACCTGCAAACACCAAGGTTGAGGCTCCTAAACCTTCTCTCACACCAGAACAACTGAAAGCTAAACAACAGGAACTCAGGGAGAGGGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAGAATGGAAAGAGAAAGAGAAAAGGAGAGAATTCGTATAGGCAAGGAGTTGCTGGAAGCAAAAAGAATTGAAGAGGAGAATGAGAGAAAACGGTTGTTGGCTCTGCGAAAAGCTGAGAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAGGCAAAAATTGGAAGAAGACAAGGCTGAAAGAAGGCGTAGACTTGGATTGCCTCCTGAAGAACCATCAGCTCCGAAACCGTCAAATGTCGTGGAGGAAAAGAAGAGTTCATTGCCTGTTCGTCCTACCACGAAAGCTGAGCAAATGAGAGAGTGCTTGCGCTCTCTCAAGCAGAACCACAAGGATGATGATGCAAGAGTAAAGAAAGCATTCCAGACTCTCCTAACCTATGTGGGGAATGTTGCCAAAAGTCCCGACGAGGAAAAATTTAGGAAAATAAGACTTAGCAACCCAACTTTTCAGGAAAGAGTTGGTGCCTTGAGAGGGGGAATTGAATTCCTGGAAATTTGTGGGTTTGAGAAAACTGAAGGGGGAGAGTTTCTGTTTTTGCCTAGGGACAAGGTTGACAAGGCAGTCCTCAATTCTGCTGGCTCTGAACTCGACTCTGCAACAAAAAATCCCTTTTTTGGAGTTCTTTAG 1233 0.4623 MAGVSLQCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCSTCGKPCRSKTESDLHTKRTGHSDFVDKTSEATKPISLEAPKVDAMSDEVVTATTDQPDDMVVPEVDKKVLEELESMGFSTGRATRALHYSGNASLEAAVNWVVEHENDPDIDQMPLIPANTKVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERRAREKIRQKLEEDKAERRRRLGLPPEEPSAPKPSNVVEEKKSSLPVRPTTKAEQMRECLRSLKQNHKDDDARVKKAFQTLLTYVGNVAKSPDEEKFRKIRLSNPTFQERVGALRGGIEFLEICGFEKTEGGEFLFLPRDKVDKAVLNSAGSELDSATKNPFFGVL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0051 410 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Lele24g0051 410 Coils Coil 216 261 - -
Lele24g0051 410 Gene3D - 302 400 - -
Lele24g0051 410 Pfam PUB domain 317 388 IPR018997 -
Lele24g0051 410 CDD PUB_UBA_plant 304 410 - -
Lele24g0051 410 SUPERFAMILY PUG domain-like 292 406 IPR036339 -
Lele24g0051 410 Pfam UBA/TS-N domain 113 147 IPR015940 -
Lele24g0051 410 SMART PGNneu 320 383 - -
Lele24g0051 410 PANTHER F13M7.16 PROTEIN 1 410 - -
Lele24g0051 410 MobiDBLite consensus disorder prediction 183 209 - -
Lele24g0051 410 MobiDBLite consensus disorder prediction 169 209 - -
Lele24g0051 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Lele24g0051 410 Coils Coil 181 213 - -
Lele24g0051 410 MobiDBLite consensus disorder prediction 254 270 - -
Lele24g0051 410 SUPERFAMILY UBA-like 99 164 IPR009060 GO:0005515
Lele24g0051 410 SMART uba_6 112 150 IPR015940 -
Lele24g0051 410 Gene3D - 112 158 - -
Lele24g0051 410 MobiDBLite consensus disorder prediction 254 300 - -
Lele24g0051 410 CDD UBA_PUB_plant 110 158 - -
Lele24g0051 410 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0051 Lele-ChrLele24 357361 362317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0051 93 410 C2H2 Transcription Factor Family AT1G04850 77.259 1.90e-150 427