Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0043 ATGCGAACTTCATGGGCAGATTTGGCTGCGAGCTCTGCAGCTGAAAGTGCAGGTCCTGGCTCTTCTGCCGGCAATGTGGGAACTGGTAACACTTCAGCTCCTTCACGGCCAGTATATGTTCCTCCACATCTTCGAAACCGTCCACCATCCACAGAAGGCCCTGCTCCAGCATATAGTGGCGGTACTGGTACTGGTACTGGTACTGGTACCGGTAATGTTGGATCACGTTTGGCTGCGCCCAGAAATGATAATCGGTTTGGGTATGGTGGCAGTAGTCGTGCTGGATGGGGAAACAGGGGCAGTGGTTGGGATCGTGGCAGGGTGAGGGAGGCCAATCCCTTTGGCGATGAGGATAATGCAGAAGAGGCATTTGGCGAGTTGGAGAATACAGGAATCAATTTTGATGCATATGAAGACATTCCTGTGGAGACTAGCGGTGCGAATGTGCCACCCCCAGTGAATACATTTGCAGAGATTGACTTGGGTGAGGCACTTAATCAGAATATACGGAGGTGCAAATATGTGAAGCCAACACCAGTTCAACGATACGCCATACCAATATCCCTCGCTGGACGAGATTTGATGGCTTGTGCCCAGACGGGTTCTGGAAAGACAGCTGCATTCTGTTTTCCTATCATCAGTGGAATTATGAGGGGCCAACCTGTGCAGAGGCCACCTCGTGGGGTGCGTACAGTGTATCCACTTGCTCTTGTTCTCTCACCTACGAGGGAGCTATCAATACAAATACATGAAGAAGCCAGGAAATTTTCTTACCAAACTGGGGTTCGGGTGGTTGTTGCTTATGGTGGGGCACCAATAAACCAGCAGCTGCGAGATCTTGAGAGAGGAGTTGACATTCTTGTGGCAACTCCTGGAAGATTGGTGGATTTGCTAGAGAGGGCTAGAGTTTCACTGCATATGATAAGATATTTGGCCTTAGATGAAGCAGATCGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTGGAGCAGATGGACATGCCTCCACCTGGTGCCAGACAGACCATGCTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGATTGGCTTCGGATTTCCTCTCAAATTATGTTTTTCTGGCTGTTGGAAGAGTGGGTTCAAGTACAGATTTGATTGTCCAAAGAGTTGAATTTGTTCAGGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCTCAGAGGGCAAATGGCGTGCAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCATTGGAGCACTGGCTGTGTATGAATGGTTTTCCAGCTACCACTATTCACGGGGATAGGACACAACAGGAAAGGGAAATGGCATTAAGGTCATTTAAAAGCGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTGGCCCATGTGGTCAACTTTGATCTACCAAATGATATTGATGATTATGTACACCGGATTGGAAGGACGGGAAGAGCAGGAAAGAAGGGTCTTGCCACTGCATTCTTCAATGAAAGCAACTCATCCCTCGCGAGGGCTTTAGCAGATTTGATGCAAGAAGCAAATCAAGAAGTCCCTGCTTGGCTCTTACGGTATGCTGCTAGATCATCTTTTGGTGGAAGGAACCGTCGATCAGGAGGAGGTCGTTTTGGTGGTCGTGACTTCCGAAGAGAGAGCTTTAACAGTAGAGGTGGTGGTTCTGATTATTACAGTGCAGGAAATAGCAGTGGCGGGTATGGGGCTTCTTCTGGTGGGTATGCTGGAGGATATGGTCCTGGCGTCACAAGCGCGTGGGATTGA 1845 0.4856 MRTSWADLAASSAAESAGPGSSAGNVGTGNTSAPSRPVYVPPHLRNRPPSTEGPAPAYSGGTGTGTGTGTGNVGSRLAAPRNDNRFGYGGSSRAGWGNRGSGWDRGRVREANPFGDEDNAEEAFGELENTGINFDAYEDIPVETSGANVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSIQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLHMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREMALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNESNSSLARALADLMQEANQEVPAWLLRYAARSSFGGRNRRSGGGRFGGRDFRRESFNSRGGGSDYYSAGNSSGGYGASSGGYAGGYGPGVTSAWD 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0043 614 FunFam Probable ATP-dependent RNA helicase DDX4 116 372 - -
Lele24g0043 614 SMART ultradead3 173 385 IPR014001 -
Lele24g0043 614 MobiDBLite consensus disorder prediction 1 35 - -
Lele24g0043 614 Gene3D - 373 552 IPR027417 -
Lele24g0043 614 Pfam DEAD/DEAH box helicase 178 359 IPR011545 GO:0003676|GO:0005524
Lele24g0043 614 CDD SF2_C_DEAD 382 518 - -
Lele24g0043 614 FunFam ATP-dependent RNA helicase RhlB 373 552 - -
Lele24g0043 614 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 370 IPR014001 -
Lele24g0043 614 CDD DEADc_DDX3_DDX4 155 376 IPR044763 GO:0003724|GO:0005524
Lele24g0043 614 Pfam Helicase conserved C-terminal domain 394 509 IPR001650 -
Lele24g0043 614 SMART helicmild6 428 509 IPR001650 -
Lele24g0043 614 Gene3D - 110 372 IPR027417 -
Lele24g0043 614 MobiDBLite consensus disorder prediction 61 77 - -
Lele24g0043 614 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 154 182 IPR014014 GO:0003724
Lele24g0043 614 MobiDBLite consensus disorder prediction 1 117 - -
Lele24g0043 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 525 IPR027417 -
Lele24g0043 614 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 381 548 IPR001650 -
Lele24g0043 614 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 124 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0043 Lele-ChrLele24 318940 322555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0043 152 541 Eukaryotic Initiation Factors Gene Family AT3G19760 32.481 3.83e-62 209