Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g2022 ATGGGCACTATAAGGGGTAGCCAGCCTCTCCGCTTCCAAATATCATTACTCTCTTCCGCCGCATCCTCCTCCAAATCCGATCTCGTCCTCCGCTGCTTTTTGCTCAGGGCACAGATGAGGGGAAGGAGCTATAGTCCATCGCCGCCAAGGGGTTATGGCAGGAGAGGAAGAAGTTCTAGCCCCAGAGGTCGTCATGGTGGCCGTGGCAGAGATCTCCCTACCAGTCTTCTCGTTCGCAACCTTCGCCATGACTGTAGGGCTGAGGATCTTCGTAGACTTTTTGGACAATTTGGCGCTCTTAAGGACATTTACCTCCCGAAAGATTATTATACTGGAGAACCCCGAGGCTTTGGTTTTGTCCAATATGTAGATCCTGCTGATGCTACAGATGCAAAATATCATGTGGATGGTCAAGTTCTTCTTGGTCGAGAGTTGACCGTTGTTTTTGCTGAGGAGAACAGAAAGAAGCCTACTGAGATGAGAGCAAGAGAAAGAAGGGGCCGATTTTCTGATCGAAGAAGGTCTCCACCTCGTTATTCTCGCTCTCCCCGATACTCTAGGTCACCCCCACGTCATAGATCTCGGTCTCGAAGCCATGGTTATTATTCTCCCCCGCCTAAACGAAGGGAGTATTCAAGATCCGTGTCACCTGAAGATAGAAGATACAGTCGAGAAAGAGAGAGAGAAAGATCATACTCACGGCAGAGTAGGGAGAGGTCATACTCACGCTCTCCTCCGCCCTATAATGGTGGTGGCTCAAGGAGTCGAAGTCAGAGTCGTACAGCTAAGGGCCCAAGCCGGAGCCGCAGCCAGAGTCCGAATCGTGATGATTATCCAAGGGAACCAGCTCGTGGTAGGTCCCCCAGCCAATGA 873 0.5109 MGTIRGSQPLRFQISLLSSAASSSKSDLVLRCFLLRAQMRGRSYSPSPPRGYGRRGRSSSPRGRHGGRGRDLPTSLLVRNLRHDCRAEDLRRLFGQFGALKDIYLPKDYYTGEPRGFGFVQYVDPADATDAKYHVDGQVLLGRELTVVFAEENRKKPTEMRARERRGRFSDRRRSPPRYSRSPRYSRSPPRHRSRSRSHGYYSPPPKRREYSRSVSPEDRRYSRERERERSYSRQSRERSYSRSPPPYNGGGSRSRSQSRTAKGPSRSRSQSPNRDDYPREPARGRSPSQ 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g2022 290 MobiDBLite consensus disorder prediction 238 272 - -
Lele23g2022 290 MobiDBLite consensus disorder prediction 43 72 - -
Lele23g2022 290 SUPERFAMILY RNA-binding domain, RBD 74 179 IPR035979 GO:0003676
Lele23g2022 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 152 IPR000504 GO:0003723
Lele23g2022 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 145 IPR000504 GO:0003723
Lele23g2022 290 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 73 273 - -
Lele23g2022 290 MobiDBLite consensus disorder prediction 203 237 - -
Lele23g2022 290 SMART rrm1_1 75 148 IPR000504 GO:0003723
Lele23g2022 290 Gene3D - 69 182 IPR012677 -
Lele23g2022 290 MobiDBLite consensus disorder prediction 155 290 - -
Lele23g2022 290 MobiDBLite consensus disorder prediction 155 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g2022 Lele-ChrLele23 22904364 22909031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g2022 75 137 Eukaryotic Initiation Factors Gene Family AT3G11400 44.444 2.33e-08 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0035 21 283527 286737 Lele23g2022 23 22904364 22909031 hybridization
Lele22g0033 22 230513 236588 Lele23g2022 23 22904364 22909031 hybridization