Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g2004 ATGGATAATTCTGGTCCGTCCCTGTTGGAAGTCCAGGCCGGTCTGGGATTTGGGGCAAGGGCACGAAATAGAAGGCTTAGCCCACTCGCACCCACACCGTCAGCTCCTCTTGGAGCCTCTGCCGTCGAAGTTTCTTACCCTCTACTTTGGATTGATGGTTATGTTTTTGTTGTTTCGGTACTTTTACTATTTTTAAGCTTGAGTGATATGGTTATGGCGTTTATGACGGTGTTCCCCATTTTGGATTATCTTAGAAAGATGGGGGTCAAGGCTAAGAAAGCAATGAAGAAGAGTCTGAAAAAGGCCACAGCTAAGGTGTCTGTTTCGAGCAAGAAAACAGAGGATGACTTCTTGCCCTTGGAAGGTGGTCCTGCACGCAAACTTCCTGAACATAAATCGCCAGAGAACACAGCCACTGTTCTATATATTGGTCGGATACCACATGGGTTCTATGAGAAGGAGATGGAAGGTTTTTTTGGACAATTTGGTACCATCAAGAGGTTGAGAATTGCAAGAAATAAAAAGACAGGAAAATCTAGACATTTTGGTTTCATACAATTTGAATCTCCTGAGGTGGCAAAAATTGTAGCTGAGACCATGCACAATTATCTGCTACAGGAGCATGTTCTGCAGGTTCATCTGATACCTCCAGAGGATGTTCATCCAAAATTATGGAGGGGCTTCAATAATCGGTTCAAGCCTTTGGATTCTGTTCAAATTGAAAGAAATCGGCTTGGCAAGGAAAGAACATTGGAAGAGCAACAAAAGTTGGTTGAAAAGATCATGAAGCGTGGTGAAAAACGACGAAAGAGGATAGAGGCTGCTGGGATTGATTATGAATGCCCTGAGATTGTGGGCACCGTCCAGCCTGGTCCTAAGAAAATAAAGTTTGAAGACTGA 900 0.4367 MDNSGPSLLEVQAGLGFGARARNRRLSPLAPTPSAPLGASAVEVSYPLLWIDGYVFVVSVLLLFLSLSDMVMAFMTVFPILDYLRKMGVKAKKAMKKSLKKATAKVSVSSKKTEDDFLPLEGGPARKLPEHKSPENTATVLYIGRIPHGFYEKEMEGFFGQFGTIKRLRIARNKKTGKSRHFGFIQFESPEVAKIVAETMHNYLLQEHVLQVHLIPPEDVHPKLWRGFNNRFKPLDSVQIERNRLGKERTLEEQQKLVEKIMKRGEKRRKRIEAAGIDYECPEIVGTVQPGPKKIKFED 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g2004 299 SUPERFAMILY RNA-binding domain, RBD 123 230 IPR035979 GO:0003676
Lele23g2004 299 CDD RRM_NIFK_like 140 213 - -
Lele23g2004 299 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 90 298 - -
Lele23g2004 299 SMART rrm1_1 140 213 IPR000504 GO:0003723
Lele23g2004 299 Gene3D - 85 221 IPR012677 -
Lele23g2004 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 210 IPR000504 GO:0003723
Lele23g2004 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g2004 Lele-ChrLele23 22817770 22820771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g2004 139 212 Eukaryotic Initiation Factors Gene Family AT1G71770 35.135 1.63e-08 53.5