Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1996 ATGGCGGGCGTATCCCTCCAGTGCGGTGACTGTGGAGCGCTATTGAGGTCCGTACAAGAAGCTCAGGAGCACGCAGAGCTCACCTCACACTCCAACTTCTCCGAATCGACTGAAGCTGTTCTCAACCTTGTTTGCTCCACTTGTGGCAAGCCATGCCGATCCAAAACCGAGAGTGATTTGCATACAAAAAGAACTGGGCATAGTGATGTTGTTGATAAGACATCTGAGGCAGCGAAACCAATAAGTTTGGAGGCTCCAAAGGTGGATGAAATGTCTGATGAAGTTGTCACGGCAACCACTGACCAACCTGATGAAATGGTTGTTCCTGAGGTTGACAAAAAGGTGCTTGAGGAACTTGAATCAATGGGTTTTTCAACTGCACGAGCAACACGTGCACTTCATTATTCTGGTAATGTTAGCCTTGAGGCTGCTGTGAATTGGGTAGTAGAGCATGAGAATGACCCTGACATAGATCAGATGCCCTTGGTACCTGCAAACACCAAGGCTGAGGCTCCTAAACCTTCTCTCACACCAGAACAACTGAAAGCTAAACAACAGGAACTCAGGGAGAGGGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAGAACGGAAAGAGAAAGAGAAAAGGAGAGAATTCGTATAGGCAAGGAGTTACTGGAAGCAAAAAGAATTGAAGAGGAGAATGAGAGAAAACGGTTGTTGGCTCTGCGAAAAGCTGAGAAAGAGGAAGAGAGAAGGGCCAGAGAGAAAATCAGGCAGAAATTGGAAGAAGACAAGGCTGAAAGAAGGCGTAGACTTGGATTACCTCCCGAAGAACCATCAGCTCCCAAACCGTCAAATGTCGTGGAGGAAAAAAAGAGTTCATTGCCAGTTCGTCCTGCTACAAAAGCTGAGCAAATGAGAGAGTGCTTGCGCTCTCTGAAGCACAACCACAAGGATGATGATGCAAGAGTAAAGAGAGCATTCCAGACTCTCCTCACTTATGTGGGGAATGTTGCCAAGAGTCCCGACGAGGAAAAATTTAGAAGAATAAGACTCAGCAACCAAACTTTTCAGGAAAGAGTTGGTGCCTTGAGAGGGGGAATTGAATTCCTGGAAATTTGTGGGTTTGAGAAAATCGAAGGGGAAGAGTTTCTGTTTTTGCATAGGGACAAGGTTGACAAGGTGGTCCTCAATTCTGCTGGCTCTGAACTCGACTCTGCAATCAAAAATCCCTTTTTTGGAGTTCTTTAG 1233 0.4615 MAGVSLQCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCSTCGKPCRSKTESDLHTKRTGHSDVVDKTSEAAKPISLEAPKVDEMSDEVVTATTDQPDEMVVPEVDKKVLEELESMGFSTARATRALHYSGNVSLEAAVNWVVEHENDPDIDQMPLVPANTKAEAPKPSLTPEQLKAKQQELRERARKKKEEEEKRTEREREKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERRAREKIRQKLEEDKAERRRRLGLPPEEPSAPKPSNVVEEKKSSLPVRPATKAEQMRECLRSLKHNHKDDDARVKRAFQTLLTYVGNVAKSPDEEKFRRIRLSNQTFQERVGALRGGIEFLEICGFEKIEGEEFLFLHRDKVDKVVLNSAGSELDSAIKNPFFGVL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1996 410 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Lele23g1996 410 Coils Coil 216 261 - -
Lele23g1996 410 MobiDBLite consensus disorder prediction 167 209 - -
Lele23g1996 410 CDD PUB_UBA_plant 304 410 - -
Lele23g1996 410 Pfam UBA/TS-N domain 113 147 IPR015940 -
Lele23g1996 410 SUPERFAMILY PUG domain-like 294 406 IPR036339 -
Lele23g1996 410 Pfam PUB domain 317 389 IPR018997 -
Lele23g1996 410 Gene3D - 112 158 - -
Lele23g1996 410 PANTHER F13M7.16 PROTEIN 1 410 - -
Lele23g1996 410 Gene3D - 302 399 - -
Lele23g1996 410 SUPERFAMILY UBA-like 98 164 IPR009060 GO:0005515
Lele23g1996 410 MobiDBLite consensus disorder prediction 254 299 - -
Lele23g1996 410 MobiDBLite consensus disorder prediction 183 209 - -
Lele23g1996 410 Coils Coil 181 213 - -
Lele23g1996 410 SMART uba_6 112 150 IPR015940 -
Lele23g1996 410 MobiDBLite consensus disorder prediction 254 270 - -
Lele23g1996 410 SMART PGNneu 320 383 - -
Lele23g1996 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Lele23g1996 410 CDD UBA_PUB_plant 110 158 - -
Lele23g1996 410 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1996 Lele-ChrLele23 22787683 22793686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1996 93 410 C2H2 Transcription Factor Family AT1G04850 77.259 2.03e-150 427