Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1979 ATGCGTTGCCATGTCGTGACCATTCCCGGAAGCGATTATCGCTTCTTCTCCTCAACACACTTATCTGTCCCCGGCAACAACACTTTCAATCACAAATCTCTCCATTTTTCCTCTCGAACCGGTGGTTTCGGCTCTCTCAGAGTTAAAGCCGCCGTCAACGACGGATATGTGGCCGAGGCATCCAAGTTGAGCTTCTACGAGCTCCTGGGTATACCCGAATCTGGGTCCTTGCCCGAGATCAAGCAGGCTTACAAGCAGCTCGCGCGCAAGTACCACCCTGATGTGTCGCCGCCCGATCGGGTGGTGGAGTATACGAAGAGGTTCATTCAGGTGCAGGAGGCCTATGAGACCTTGTCTGATCCTAGAAGGAGGGCTATGTACGATAGAGACATGGCCAGAGGGATTCACTTCGCCTTCTCCGCTCGCCGGCGCTACTACGACGATGAGGTAATTGAACAAAAGAGTGAGTGGAAAGCTCGTTGGCAAAGTCAGCTATCAGAGCTGAAGAGAAGAAGCAAGTTCAAGGGCAACGGAGAAAATCTGTCTTGGGCAGCTCAAATGCGTCGTCGAAGAGCGGAAGCGTGTGACGACTCATAA 597 0.526 MRCHVVTIPGSDYRFFSSTHLSVPGNNTFNHKSLHFSSRTGGFGSLRVKAAVNDGYVAEASKLSFYELLGIPESGSLPEIKQAYKQLARKYHPDVSPPDRVVEYTKRFIQVQEAYETLSDPRRRAMYDRDMARGIHFAFSARRRYYDDEVIEQKSEWKARWQSQLSELKRRSKFKGNGENLSWAAQMRRRRAEACDDS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1979 198 FunFam Chaperone protein dnaJ 20, chloroplastic 50 159 - -
Lele23g1979 198 Gene3D DnaJ domain 52 172 IPR036869 -
Lele23g1979 198 CDD DnaJ 65 120 IPR001623 -
Lele23g1979 198 SUPERFAMILY Chaperone J-domain 61 137 IPR036869 -
Lele23g1979 198 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Lele23g1979 198 Pfam DnaJ domain 65 128 IPR001623 -
Lele23g1979 198 SMART dnaj_3 63 123 IPR001623 -
Lele23g1979 198 ProSiteProfiles dnaJ domain profile. 64 131 IPR001623 -
Lele23g1979 198 PRINTS DnaJ domain signature 66 84 IPR001623 -
Lele23g1979 198 PRINTS DnaJ domain signature 103 123 IPR001623 -
Lele23g1979 198 PRINTS DnaJ domain signature 84 99 IPR001623 -
Lele23g1979 198 PRINTS DnaJ domain signature 123 142 IPR001623 -
Lele23g1979 198 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 58 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1979 Lele-ChrLele23 22665444 22666914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1979 60 128 C2H2 Transcription Factor Family AT1G74250 40.278 2.65e-08 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1979 23 22665444 22666914 Lele23g1979 23 22665444 22666914 ECH
Lele21g0075 21 496615 501611 Lele23g1979 23 22665444 22666914 hybridization
Lele22g0075 22 452904 456584 Lele23g1979 23 22665444 22666914 hybridization