Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1972 ATGTTAAGTCCGAGATTCGCTTATTTTCTTGTTAATGCGACACTGAAGTCTGTCGACAGTTTTCATGGTTCCTGTAGCTGGCTTAACAGTGCTTTGTTTTTGGTCTGTCTGCTAAATACTATTATGTTGGTTCTGTTCGTGTTTTCAGGACATAAACTTGTAGTTATAATGGCATTTTGCAACAAACTTGGGAATCTGTTAAGGCAGGGTGCTGCACAAAACAGACAAGTACCAGTTGCATCAATGCTGAATTATGTTCGCTGCATGTCATCCTCCAAGCTCTTCATTGGCGGCCTTTCTTATGCAGTTGACGATCAATCTCTCAGGGATGCGTTTGCCAACTTTGGAGATGTGGTGGAGGCAAGGGTTATAGTTGATAGAGACACTAATAAGTCAAGAGGTTTTGGATTTATCAATTTCTCCAGTGAAGAATCTGCTAGTTCAGCTATTTCTGCAATGGATGGGCAGGATCTAAGTGGGAGAAACATTCGGGTGAGCTATGCAACTGACAGACCACCCAGACCTCGATCCTTTGGTGGTAGTAGTGGATTTGGTGGCGGTTATGGTGGAAATGGTGGTGGTTATCGTAGGGATGATGGAGGTTTTGACAATCCATCCTTTTAA 624 0.4295 MLSPRFAYFLVNATLKSVDSFHGSCSWLNSALFLVCLLNTIMLVLFVFSGHKLVVIMAFCNKLGNLLRQGAAQNRQVPVASMLNYVRCMSSSKLFIGGLSYAVDDQSLRDAFANFGDVVEARVIVDRDTNKSRGFGFINFSSEESASSAISAMDGQDLSGRNIRVSYATDRPPRPRSFGGSSGFGGGYGGNGGGYRRDDGGFDNPSF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1972 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 170 IPR000504 GO:0003723
Lele23g1972 207 Gene3D - 83 204 IPR012677 -
Lele23g1972 207 MobiDBLite consensus disorder prediction 167 207 - -
Lele23g1972 207 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 66 194 - -
Lele23g1972 207 SMART rrm1_1 93 166 IPR000504 GO:0003723
Lele23g1972 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 164 IPR000504 GO:0003723
Lele23g1972 207 SUPERFAMILY RNA-binding domain, RBD 87 200 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1972 Lele-ChrLele23 22619400 22621252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1972 91 177 Eukaryotic Initiation Factors Gene Family AT1G49760 35.632 1.08e-12 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0081 21 539406 541151 Lele23g1972 23 22619400 22621252 hybridization
Lele22g0082 22 489710 491026 Lele23g1972 23 22619400 22621252 hybridization