Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1965 ATGGACGCAGCGCCACCTTCGTCCGCCGGCTCGGGCGCTGGAGCCGGCGGAAATGGAGGTCCAGCACCTTTTCTCATCAAGACCTATGAAATGGTCGACGATTCTCCCACCGACGATATTGTATCATGGAGCCCCACCAACAACAGCTTCGTCGTATGGAATCCCCCTGAGTTCGCTCGTCATCTTCTTCCTACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTCAATACCTACGGATTTCGAAAAATGCATCCTGAGCGATGGGAGTTCGCTAATGATGATTTCATAAAAGATCAAAAGCATCTTCTCAAGAATATTCACCGCAGGAAACCTATCCACAGTCACAGCCATCCTCCAGGCTCTGTTGTGGACTCAGAACGGGCAGCATTTGAGGAAGAAATAGAGAAACTTATTCATGAGAAATCTGCTCTTGAGTCCAACATCGTCAGATTTAAACAACACTCAGCTGCAAAGCTTCAGCTGGAAGATCTATTGCAGCGATTAGACAGTATGGAGAAGAGACAGAAGAATTTGCTGAACTTCTTTGAAAAGTCTCTTCAGAATCCTTGTTTTGTTGAACATCTTTCACGGAAACTTGATTGCATGGATTTGTCAGCATATAATAAGAAAAGAAGATTACCTCAGGTTGATCACTTGCAGCCAGTTGGTGAAAGTAACTTAATTGAAAATCATAGCAATTTTAGAACAGAATTTGGCACTGTCATCCACCAAGATTTCTCAAATAAACTCAGATTGGAGTTATCGCCAGCGGTTTCTGATATGAATTTGGTATCACGTAGCACTCAGAGTTCCAATGAAGATGGAGACAATCCACAGAAGAGGCTATATGAAGGAACACCCAAAGGAGTTCAGACAAGAACAACTCTTTCATTTGCGCCTGAAACATTAGAGCTTGCAGATACTGGAGCATCTTTTTCTTTCAAGATGGATTCATGTCCATCACAGAGAGCAACAACTGCTGATAGCACGAAACTGCACTCTTTGCATCTAAGCAATGAAGAAGGTGACAGTCATATATCCTGCCATCTAAATTTGACTCTGGCATCTTCTCCTTTGCAAGTCAACAGAAATTCATACTCGGCTAGATCACCCCAAATAGACTGTCAGGAGATAGGCAAGTTGGCAGAATCAAGATTTTACGAAAACGATAAAGATTCTAATCGTGGAGTTCCTTCAACCAGAAATCCAGCTCATGACGTTGCCAATTTAACTTCCTCACAGTCGAAGGAGACTCCAAGCAGCAACCAAGCAGCAACGGCTGCTCCAGCCAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACTGAAAGACCTGGTTGTTCAGACAATGAAGAGGCAATATCCAACTATAGAGCAAATCCATATGAAGAGCAAGAGGAAGGGCGGTCAATTCCTGGAATCTCCAGAAATGTTAAGAATATGGATCGGCTCACACTTTGA 1473 0.4352 MDAAPPSSAGSGAGAGGNGGPAPFLIKTYEMVDDSPTDDIVSWSPTNNSFVVWNPPEFARHLLPTYFKHNNFSSFIRQLNTYGFRKMHPERWEFANDDFIKDQKHLLKNIHRRKPIHSHSHPPGSVVDSERAAFEEEIEKLIHEKSALESNIVRFKQHSAAKLQLEDLLQRLDSMEKRQKNLLNFFEKSLQNPCFVEHLSRKLDCMDLSAYNKKRRLPQVDHLQPVGESNLIENHSNFRTEFGTVIHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGDNPQKRLYEGTPKGVQTRTTLSFAPETLELADTGASFSFKMDSCPSQRATTADSTKLHSLHLSNEEGDSHISCHLNLTLASSPLQVNRNSYSARSPQIDCQEIGKLAESRFYENDKDSNRGVPSTRNPAHDVANLTSSQSKETPSSNQAATAAPARVNDVFWEQFLTERPGCSDNEEAISNYRANPYEEQEEGRSIPGISRNVKNMDRLTL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1965 490 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele23g1965 490 MobiDBLite consensus disorder prediction 268 289 - -
Lele23g1965 490 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele23g1965 490 MobiDBLite consensus disorder prediction 463 490 - -
Lele23g1965 490 MobiDBLite consensus disorder prediction 390 433 - -
Lele23g1965 490 MobiDBLite consensus disorder prediction 400 432 - -
Lele23g1965 490 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 274 IPR027725 -
Lele23g1965 490 Gene3D - 18 114 IPR036388 -
Lele23g1965 490 FunFam Heat shock transcription factor 1 17 114 - -
Lele23g1965 490 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Lele23g1965 490 Coils Coil 131 185 - -
Lele23g1965 490 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele23g1965 490 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele23g1965 490 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele23g1965 490 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1965 Lele-ChrLele23 22585777 22588922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1965 1 490 HSF AT4G13980 54.637 2.56e-168 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele23g1965 HSF_DNA-bind 1.6e-31 CL0123