Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1942 ATGGACGACGACTTTGAGTTCCCCACTGCGACTAACATGGGCAACGAAGACGAAGATATGGGGATTCCGGAGGATGACCCTGTTAGCCCAATTCTCCAGGTAGGAGAGGAGAAAGAGATAGGAAAGAATGGCCTGAAGAAGAAGTTGGTTAAGGAAGGGGAAGGATGGGAGACTCCAAACTCTGGAGACGAGGTGGAAGTTCACTACGCCGGGACATTGTTGGATGGAACTCAGTTTGATTCTAGCCGTGACAGGGGAACCCCATTCAAGTTCAAACTCGGGCAAGGGCACGTAATAAAGGGATGGGACGAGGGAATCAAAACCATGAAGAAAGGTGAAAATGCCATTTTCACAATACCTCCAAAATTGGCCTATGGAGAGTCTGGATCACCTCCGACTATTCCCCCTAATGCAACCCTACAATTTGATGTGGAACTTCTATCTTGGACCAGTGTGAAGGACATAAGTAAGGATGGGGGTATCTTGAAAACTATTCTCTCCGGAGGAGAGAGTTGGGAAAATCCCAAGGATCTGGATGAAGTATTTGTTAAGTATGAAGCCAGGCTCTATAATGGGACCGTCATTTCCAAATCTGATGGAGTGGAGTTTACCGTGGAAGATTGCTATTTCTGTCCTGCTCTGGCTAAGGCTGTGAAAACAATGAAGAAAGGAGAGAAAGTCCTTTTGACTGTGAAGCCACAATATGCATTTGGCGAGAATGGAAGGCCAGCATCCGGTGACGAAGATGCTGTACCACCTAATTCGTCACTCCAAATCAATCTTCAACTGATATCTTGGAAGACTGTATCTAATATTACTAAGGATAAGAAAGTGATCAAAAAGACTTTGAAGGAGGGGGAGAAATATGAACGACCAAATGATGGATCTGTTGTCCAAGTGAGACTTATTGGCAAGCTGCAAGATGGAACTGTTTTCACCAAGAAGGGTTATGATGAGGAGCAACCATTCGAGTTCAAAGTGGATGAAGAGCAAGTAATTGAGGGACTCGATCAAGCCGTGAAGAACATGAAGAAAGGGGAAATTGCACTGGTGACCATACAGCCTGAATATGCCTTTGGCGCCTCTGGCTCTCCCCAAGAATTTGCTGTTGTTCCTCCTAATTCAACCGTATACTATGAAGTTGAGCTGATTTCATTTGAGAAGGAAAAGGAATCATGGGAGTTGAACACAGCAGAGAAGATTGGGGCAGCTGTAAAGAAGAAGGAAGAAGGGAACGTATATTTCAAGGCCGGTAAATATAATAGAGCATCGAAGAGATATAAGAAGCTTAAAGACTACAAGGAAGCAGTGAAGTTGTGCACAAAGGTATTAGAGCTTGACAGGGGGAATGTGAAGGCTCTGTACCGAAGGGCACAAGCATATATACAACTTGTGGATTTGGACCTCGCTGAAATGGACATTAAGAAGGCCCTTGAAATTGAGTCAGACAATAGGGAGTTGAAAGTGGAGTACAGAGTTTTGAAGGAGAAAGTGAGAGAATACAACAAGAAGGATGCAGAGTTCTATGGCGGCATGTTTGCGAAAATGAACAAGTTCGAACGAACTAGAAGAGCAAATGCAGCAGCAAAACCGCAGCACGTCCCAATGACTATTGATAGCAAAGCATGA 1629 0.4444 MDDDFEFPTATNMGNEDEDMGIPEDDPVSPILQVGEEKEIGKNGLKKKLVKEGEGWETPNSGDEVEVHYAGTLLDGTQFDSSRDRGTPFKFKLGQGHVIKGWDEGIKTMKKGENAIFTIPPKLAYGESGSPPTIPPNATLQFDVELLSWTSVKDISKDGGILKTILSGGESWENPKDLDEVFVKYEARLYNGTVISKSDGVEFTVEDCYFCPALAKAVKTMKKGEKVLLTVKPQYAFGENGRPASGDEDAVPPNSSLQINLQLISWKTVSNITKDKKVIKKTLKEGEKYERPNDGSVVQVRLIGKLQDGTVFTKKGYDEEQPFEFKVDEEQVIEGLDQAVKNMKKGEIALVTIQPEYAFGASGSPQEFAVVPPNSTVYYEVELISFEKEKESWELNTAEKIGAAVKKKEEGNVYFKAGKYNRASKRYKKLKDYKEAVKLCTKVLELDRGNVKALYRRAQAYIQLVDLDLAEMDIKKALEIESDNRELKVEYRVLKEKVREYNKKDAEFYGGMFAKMNKFERTRRANAAAKPQHVPMTIDSKA 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1942 542 SUPERFAMILY FKBP-like 271 405 - -
Lele23g1942 542 SMART tpr_5 451 484 IPR019734 GO:0005515
Lele23g1942 542 SMART tpr_5 417 450 IPR019734 GO:0005515
Lele23g1942 542 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 295 387 IPR001179 GO:0003755
Lele23g1942 542 SUPERFAMILY FKBP-like 37 155 - -
Lele23g1942 542 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 157 270 - -
Lele23g1942 542 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 290 384 IPR001179 GO:0003755
Lele23g1942 542 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 173 264 IPR001179 GO:0003755
Lele23g1942 542 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 57 147 IPR001179 GO:0003755
Lele23g1942 542 FunFam Peptidylprolyl isomerase 35 153 - -
Lele23g1942 542 Gene3D Tetratricopeptide repeat domain 430 514 IPR011990 GO:0005515
Lele23g1942 542 Gene3D Tetratricopeptide repeat domain 388 429 IPR011990 GO:0005515
Lele23g1942 542 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 178 267 IPR001179 GO:0003755
Lele23g1942 542 MobiDBLite consensus disorder prediction 1 29 - -
Lele23g1942 542 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 62 150 IPR001179 GO:0003755
Lele23g1942 542 FunFam Peptidylprolyl isomerase 268 389 - -
Lele23g1942 542 Gene3D - 37 153 IPR046357 GO:0003755
Lele23g1942 542 SUPERFAMILY TPR-like 397 516 IPR011990 GO:0005515
Lele23g1942 542 Coils Coil 477 504 - -
Lele23g1942 542 Pfam Tetratricopeptide repeat 452 484 IPR019734 GO:0005515
Lele23g1942 542 Pfam Tetratricopeptide repeat 425 448 IPR019734 GO:0005515
Lele23g1942 542 FunFam Peptidylprolyl isomerase 154 267 - -
Lele23g1942 542 Gene3D - 154 267 IPR046357 GO:0003755
Lele23g1942 542 ProSiteProfiles TPR repeat profile. 451 484 IPR019734 GO:0005515
Lele23g1942 542 SUPERFAMILY FKBP-like 154 269 - -
Lele23g1942 542 Gene3D - 268 387 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1942 Lele-ChrLele23 22461359 22464364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1942 22 542 Calmodulin-binding Proteins AT5G48570 67.260 0.0 746