Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1918 ATGGCGTTTGTTCCCCAACCCCAAGAAGCCGAAGAAGACACCAACGTTGACATACACACCAGCCACGGCACTCCCATTCGTTATCTTCCCCTCGATCATCTTTATTCTGCTACATCCCCCTGTCGTGTCAGCGCCAGTGGTTCTTCCAACGTTATGTCGAAGAAGGTCAAGGCCCGCAAGCTCACTCTTACCGACTTCGAGTTCGACCCTGATCATAAGAACTCACTTACTAAGTCCCCTCTTCTTCATGTCTACTCTCGCCGCCATAAGAAGCCCCGACATTCCCCGGAGAGCTTGTCCTTTTTTGATTCTTTGATGCGCCGGGGTGGACCCACCTCGGATATTTGCAAAATTGATGACTATGGGGAGCACCATGAGAACGGCCATTCTGAGGCTGGGACACTGAAGAAGAGAAAAGCTGGGAGCCCGGAATTGGTGAATTTGGGGGTGGATTTGAGCGCATTGGGTACTCCTGACGTGCCTCGGTTGAGGGACTGTCGTGGTCATAATGTTACTAATATCAGTGATTGTGACTCCAGTATGAAGAAAAATCATGCCCCCTTGGAAAATTTTCCAAAGCCATTGCCTGCATCCCGCACCATAAAGAGATGGGTCAGGTTGACTTTTGATAACGCTGATCCTGAGACACTGGTCGGACTACGATGCAAGGTTTATTGGCCCATGGATTTGAAATGGTACATTGGTCGAGTCATAGGTTATGATTCAGAAACTAAGATACATCATGTTAAATACGAAGATGGCGATGAAGAAAACCTAATTCTTTCAAATGAGAAAATAAGGTTTCATGTTTCCCGTGAGGAACTGAAGCAATTAAACTTGAGTAGTTGTAACATTTCTGATTATGATGCGGAAGAGCTGCTTGCCTTGGCTGCAAGTTTAGATAACTGTCAGGAGTTTGAGCCTGGTGAAGTCGTATGGGCCAAGCTAACAGGTCATGCAATGTGGCCAGCTCTTGTTATGGATGAATCACTTGCTGGGAATTGTAAAGGTTTAAAATTGTTTTCGGGTGGAAGATCCGTTCCTGTACACTTTTTTGGTACACATGACTTTGCAAGGGTTAGACTACTGCAGGTGAAATCATTTCTCACTGGACTTCTTTCTCGTCTACACTTGAAGTGCGAGAAACCTCATTTTTTTGAAGGTCTAGAAGAGGCAAAAATCTATTTAAGCAAACAGAAGCTTCCTTCTGAAATGCTGCGATCACAGAAAAGATGCAAGGCTGGTGACTGGAAAGATGTACAAGGAGAGGATGAAGGATGTACAGATTCAGGTGAAGATTGTTTAGATGACGGATGGGCCCAGACAGCATTGAAAAACATTGAAACTTCTCCTTATGTAGTAGGAGACTTGAAAATTTTAAGCCTTGGAAGAATTGTTCATGATTCTGCAAATTTTCGAGATGGAAGTGTAATCTGGCCAGAAGGCTACATGGCTGTGAGGAAGTTTACTTCAATTACTGACCCAAAAGTTTGCACATCATATAAGATGGAGGTGTTGAGAGATCCTGAGTCAAAGGTTCGACCACTTTTTAGGGTGACACTGGAGGGTGGAGAGCAGTTCAATGGTCCCACAGCATCGGCTTGCTGGAACAAAATTTACAAACGGATAAAAAAAATGGAAAAGGGCGCTTCTGATGTTTCCACAGCAGATGGTAGTCTTGTAAGGGACTATAAATCAGGAACTGATATGTTTGGTTTTTCCAATCCTAAAGTTGCTAAACTTATACAGGGATTATATAAATGCAGCACCTCTTCTAGAAACTTAATGTGCAAGATAGGTTCTGGAAGATATAGTGATCTGCCTGTTGGTTATAGGCAGGTTCATATTGATTGGTTTGACCTCGATAAGTGCAATGTGTGTCACATGGATGAGGAATACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCCAGATGTTATGGAGAACTAGAACCTTCTAATGGAGTGCTATGGTTGTGTAACCTATGTCGTTCCGGTGCTCCCTCCCCCCCACCACCTTGCTGCTTATGTCCACTGATAGGAGGTGCAATGAAGCCTACAACAGATGGTCGATGGGCTCATTTGGCATGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGCGGATGGAGCCTATTGATGGGATAAGTAGAATCAGCAAGGACCGCTGGAAGTTGTTATGCAGCATTTGTGGGGTGCCTTATGGTGCTTGCATCCAGTGTTCAAATAATTCTTGTCGGGTGGCATATCATCCACTTTGTGCACGGGCTGCTGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGGCTCTATCTACTTTCCGTTGATGATGATGAAGATCAGTGCATTCGCTTGCTCTCTTTCTGCAAGAAACATAGGCATCCATCAAATGATCATTATATTGCTGATGAACGCATTGGGCGAGTTGCCAGTCAATGTTCAGAATATGAACCACCACCCAACCCATCTGGTTGTGCTCGCAGTGAACCATACAATAACTTCGGTAGGAGAGGACGAAAAGAACCTGAAGCACTAGCAGCGGCATCCTTAAAACGCTTGTTTGTAGAAAATCAATCTTATTTGGTTGGTGGACATTGCCAGCATGGAGTGTCAGACAATGTAGAGCCATCTGGAAGAGGAGTTTGCTCTAAATTCTTTTGTAGCCAGCAAAGGCTGAAGACCTCTCTGGCTGATGCTTCAGATGGCATACTTTCTATTGCTGAGAAATATAAATACAAGAGGGAAACCTTTAGGAAACGGCTAGCATTTGGAAAATCAAGAATTCATGGATTTGGCATCTTTGCCAAGCATCCATATAAAGGCGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCTTCCATAGCTGACCGGAGAGAGCACTTTATATATAATTCTTTGGTGGGTGCTGGAACATACATGTTTCGGATTGATGATGAACGAGTCATTGATGCTACCAGAGCAGGAAGCATTGCTCATTTGATTAATCATTCTTGTGCTCCAAATTGCTACTCAAGAGTTATCAGTGTTAATGGTGATGAGCATATAATAATATTTGCAAAGAGGGACATTAAACAGTGGGAGGAGCTCACATATGATTATAGGTTTTTTTCAATTGATGAACGATTAGCTTGTTATTGTGGCTTCCCAAGATGTCGAGGTGTCGTAAATGATACAGAGGCAGAAGAGCGAGCTGCACAGCTATATGTACCTCGGAGTGAATTGATAGATTGGAGAGGAGAATAA 3276 0.4377 MAFVPQPQEAEEDTNVDIHTSHGTPIRYLPLDHLYSATSPCRVSASGSSNVMSKKVKARKLTLTDFEFDPDHKNSLTKSPLLHVYSRRHKKPRHSPESLSFFDSLMRRGGPTSDICKIDDYGEHHENGHSEAGTLKKRKAGSPELVNLGVDLSALGTPDVPRLRDCRGHNVTNISDCDSSMKKNHAPLENFPKPLPASRTIKRWVRLTFDNADPETLVGLRCKVYWPMDLKWYIGRVIGYDSETKIHHVKYEDGDEENLILSNEKIRFHVSREELKQLNLSSCNISDYDAEELLALAASLDNCQEFEPGEVVWAKLTGHAMWPALVMDESLAGNCKGLKLFSGGRSVPVHFFGTHDFARVRLLQVKSFLTGLLSRLHLKCEKPHFFEGLEEAKIYLSKQKLPSEMLRSQKRCKAGDWKDVQGEDEGCTDSGEDCLDDGWAQTALKNIETSPYVVGDLKILSLGRIVHDSANFRDGSVIWPEGYMAVRKFTSITDPKVCTSYKMEVLRDPESKVRPLFRVTLEGGEQFNGPTASACWNKIYKRIKKMEKGASDVSTADGSLVRDYKSGTDMFGFSNPKVAKLIQGLYKCSTSSRNLMCKIGSGRYSDLPVGYRQVHIDWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPSNGVLWLCNLCRSGAPSPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGISRISKDRWKLLCSICGVPYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRHPSNDHYIADERIGRVASQCSEYEPPPNPSGCARSEPYNNFGRRGRKEPEALAAASLKRLFVENQSYLVGGHCQHGVSDNVEPSGRGVCSKFFCSQQRLKTSLADASDGILSIAEKYKYKRETFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPRCRGVVNDTEAEERAAQLYVPRSELIDWRGE 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1918 1091 Gene3D - 215 268 - -
Lele23g1918 1091 SMART fyrn_3 464 508 IPR003888 GO:0005634
Lele23g1918 1091 Gene3D SET domain 818 1079 IPR046341 -
Lele23g1918 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 674 IPR013083 -
Lele23g1918 1091 SMART TUDOR_7 214 272 IPR002999 -
Lele23g1918 1091 Pfam PWWP domain 309 395 IPR000313 -
Lele23g1918 1091 ProSiteProfiles Zinc finger PHD-type profile. 621 672 IPR019787 -
Lele23g1918 1091 CDD PHD_ATX1_2_like 623 669 IPR042010 -
Lele23g1918 1091 SMART PHD_3 623 670 IPR001965 -
Lele23g1918 1091 SMART PHD_3 735 801 IPR001965 -
Lele23g1918 1091 ProSiteProfiles FYR domain FYRN motif profile. 449 508 IPR003888 GO:0005634
Lele23g1918 1091 SMART PWWP_4 306 369 IPR000313 -
Lele23g1918 1091 FunFam Histone-lysine N-methyltransferase 860 1084 - -
Lele23g1918 1091 FunFam Histone-lysine N-methyltransferase 675 803 - -
Lele23g1918 1091 CDD ePHD_ATX1_2_like 686 800 IPR041956 -
Lele23g1918 1091 Pfam F/Y-rich N-terminus 455 505 IPR003888 GO:0005634
Lele23g1918 1091 ProSiteProfiles FYR domain FYRC motif profile. 512 598 IPR003889 GO:0005634
Lele23g1918 1091 Gene3D - 450 590 - -
Lele23g1918 1091 ProSiteProfiles SET domain profile. 927 1045 IPR001214 GO:0005515
Lele23g1918 1091 SUPERFAMILY FYVE/PHD zinc finger 726 765 IPR011011 -
Lele23g1918 1091 Pfam PHD-finger 636 670 - -
Lele23g1918 1091 SUPERFAMILY FYVE/PHD zinc finger 614 688 IPR011011 -
Lele23g1918 1091 SUPERFAMILY Tudor/PWWP/MBT 216 259 - -
Lele23g1918 1091 ProSitePatterns Zinc finger PHD-type signature. 624 669 IPR019786 -
Lele23g1918 1091 Pfam SET domain 938 1044 IPR001214 GO:0005515
Lele23g1918 1091 SMART fyrc_3 516 596 IPR003889 GO:0005634
Lele23g1918 1091 SMART set_7 927 1051 IPR001214 GO:0005515
Lele23g1918 1091 CDD SET_SETD1-like 915 1063 - -
Lele23g1918 1091 Pfam F/Y rich C-terminus 514 589 IPR003889 GO:0005634
Lele23g1918 1091 MobiDBLite consensus disorder prediction 1 21 - -
Lele23g1918 1091 CDD TUDOR 219 263 IPR002999 -
Lele23g1918 1091 Pfam PHD-zinc-finger like domain 679 800 - -
Lele23g1918 1091 SUPERFAMILY Tudor/PWWP/MBT 302 402 - -
Lele23g1918 1091 PANTHER PHD FINGER PROTEINS 39 1077 - -
Lele23g1918 1091 SUPERFAMILY SET domain 925 1064 IPR046341 -
Lele23g1918 1091 ProSiteProfiles Extended PHD (ePHD) domain profile. 677 801 IPR034732 -
Lele23g1918 1091 ProSiteProfiles PWWP domain profile. 308 371 IPR000313 -
Lele23g1918 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 675 803 IPR013083 -
Lele23g1918 1091 Gene3D - 297 406 - -
Lele23g1918 1091 ProSiteProfiles Post-SET domain profile. 1051 1067 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1918 Lele-ChrLele23 22322650 22332669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1918 599 771 C2H2 Transcription Factor Family AT3G14740 38.068 4.69e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele23g1918 zf-HC5HC2H_2 1.9e-33 CL0390