Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1895 ATGGCTGATATGATACGATCCTCTGCTGCCTCTAGCACCCAAAGAAATATGACAAAGCTCAAACCTGAAACTGAAGAAACAATTTGGAATATCTCAGTCTCAGGTTCATTAAATACAAATGGGACTGCTATTATAAGGCCTTGCTCAGTTTGTGGTTTAAGGTTTTCTTCTTGGTGCACTTCGGCCTTTTTTGACCAATTGTTGCAACATGTTGAGTCCCCTTTATTTCCTTTGACAACTTGTTTCAGGATTCCCATTTTCGGGGGAAGAGTACTAGATTTGCATCGGCTTTTCTTGGAAGTGACTTTTCGTGGAGGCATTGAGGAAATTATGAGGGAGAGAAGATGGAAAGAAATAGCTGCTGTTTTCCACTTTCCATCTACAGCCACGAATGCTTCTTTTGTGTTGCGGAGGCACTATTCTCAATTGCTTTACCAATATGAACAAATATACTATTTTAAGGCCCCAGGATGGCATGACACTTATGATGCTGCGCAGAGTCCATCGACAGTGCCAGTTCCTGCTCCAAGAACGCAGCAATTTTTGCCTCCCCCGGTTAATGCCTCTGAATTGCCTGAAGGGACTTCAGCTTCTTCTGCAGGAACTCCAGTGATTGGGGTGATTGATGGAAAATTCGAAACTGGGTATCTTGTTACTATCACAGTGGGTTCAGAGACACTTAAAGGTGTACTATATCTGGCTCCACAAAACGCTGCCTTGCCAACAATGCTGGAACATAGTAGTGTTCCAGTCAGTAACAGTAATACCTCATCAGCTGCTTTGGGCATCCATCGTCACCGACGCAAGAAATTTGCAGATCAGCATGCAAGATTGAAACTACTTCACCATGGCAAGGACCGGGAAATCAGTAAGATTATTGATGAACTCTGGAACAATTTAATACAGCTGGAGAAATCCGTTTATCAAGAGAAGGCTCTTAAGGATAAAGAGAGGTACCAAGCTGAAATGGAGAATTATAGGGAGAAACTGAAAACAGGCCAGGGTATAGGCGATATGGTGCCGCTACAACAACAAATTCCTGATAAGGATATGATGGATGCCGACATAAAATTGGATGAAACTGAGGGAGTAGAATTTTCTCAAACACAAGAAGAGGGCTGTGCTGGTGAAAGTGACTACGAAGATGATAAAGATACAGAGCATAATATGAACATGGATACATCTCATGGAATGATAGTAGTGGGGGCTGAATCTAGCTATCTGGGTGCAGAGAAACAATCAAAGGAGAAAGAAGGGAATGATGATGGACATCATCAACAAGCTCAAAAGATGGATGAGAGCTCAAGCATGATGGCTATGTAG 1323 0.4255 MADMIRSSAASSTQRNMTKLKPETEETIWNISVSGSLNTNGTAIIRPCSVCGLRFSSWCTSAFFDQLLQHVESPLFPLTTCFRIPIFGGRVLDLHRLFLEVTFRGGIEEIMRERRWKEIAAVFHFPSTATNASFVLRRHYSQLLYQYEQIYYFKAPGWHDTYDAAQSPSTVPVPAPRTQQFLPPPVNASELPEGTSASSAGTPVIGVIDGKFETGYLVTITVGSETLKGVLYLAPQNAALPTMLEHSSVPVSNSNTSSAALGIHRHRRKKFADQHARLKLLHHGKDREISKIIDELWNNLIQLEKSVYQEKALKDKERYQAEMENYREKLKTGQGIGDMVPLQQQIPDKDMMDADIKLDETEGVEFSQTQEEGCAGESDYEDDKDTEHNMNMDTSHGMIVVGAESSYLGAEKQSKEKEGNDDGHHQQAQKMDESSSMMAM 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1895 440 SUPERFAMILY HMG-box 282 331 IPR036910 -
Lele23g1895 440 SMART bright_3 61 153 IPR001606 GO:0003677
Lele23g1895 440 MobiDBLite consensus disorder prediction 362 440 - -
Lele23g1895 440 Gene3D High mobility group box domain 264 349 IPR036910 -
Lele23g1895 440 SMART ARID_2 55 148 - -
Lele23g1895 440 SMART hmgende2 268 328 IPR009071 -
Lele23g1895 440 Pfam ARID/BRIGHT DNA binding domain 62 148 IPR001606 GO:0003677
Lele23g1895 440 Pfam HMG (high mobility group) box 269 327 IPR009071 -
Lele23g1895 440 MobiDBLite consensus disorder prediction 410 429 - -
Lele23g1895 440 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 253 327 IPR009071 -
Lele23g1895 440 Gene3D - 57 160 IPR036431 GO:0003677
Lele23g1895 440 MobiDBLite consensus disorder prediction 1 20 - -
Lele23g1895 440 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 63 373 - -
Lele23g1895 440 Coils Coil 309 336 - -
Lele23g1895 440 ProSiteProfiles ARID domain profile. 57 152 IPR001606 GO:0003677
Lele23g1895 440 SUPERFAMILY ARID-like 62 162 IPR036431 GO:0003677
Lele23g1895 440 CDD HMGB-UBF_HMG-box 271 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1895 Lele-ChrLele23 22154538 22158099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1895 78 358 ARID Transcription Factor Family AT1G04880 49.068 1.20e-85 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele23g1895 ARID 4.8e-13 CL0123