Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1886 ATGATGATGAACAACGTTAGAAGTAATAACAATATGCAAAAGTTCAAAGGCGTAGTGCCTCAACAAAATGGTCATTGGGGTGCTCAAATATACGCAAACCACCAAAGAATATGGCTTGGAACCTTCAAATCCGAACGAGAAGCCGCCATGGCTTACGACAGCGCCACCATCAAGCTCCGAAGTGGCGAAAGCCACCGGAACTTCCCGTGGAACCATCAAACGGTTCAAGAGCCTCTTTTCCAAAGCCATTACAGCACCGAAGCAGTGCTAAGCATGATCAGAGATGGTACCTATCCTTCCAAGTTTGCTTCTTTTCTCTTAAGCACCCAAACCCTAACCCTAACCCTAAATGGCGTCGTCGACGAACAAATAACAACAAGTGCCAGAAATAACGTTAAAGGTGAAGAAAAATTCTCCTGCACCCAACTTTTCCAGAAGGAACTTACACCAAGTGACGTGGGAAAACTCAATAGGCTCGTCATCCCCAAGAAACATGCGAGTAGGTATTTCCCTTGCGTTTCTGAAGCCGACAATAATAACGATAATTATGGGACGATGATGGATATTAATAATAGTGACACAGAGCTTGTGTTTTACGACAAGCTAATGAGATCGTGGAAATTTAGATACTGTTATTGGAGAAGCAGCCAAAGCTTCGTGTTCACGAGGGGTTGGAATAGGTTTGTGAAAGACAAGAGATTGAAGGCTAAGGATGTTATTGTATTTTATAAGTGTGAGCCTATAATTAATAATAATGGGGGTCAAGTTTTTTATTTGATTGATGCTATCTATAATAATGAAGATATTAATGTAAATGAGAGCTCGAGGACTCAGTCTTTTGGAAAAATGAGTTTTGACAATATTAGAACAGAAGAAGACGAAGACAAAGATCACGATGACGGCGGCGACGAGACAGAAGAGAGAAAAGAAATGTTGCATTCTCCGACAGATCATGTTGCCCAAAAGGGTTTGAAGCTTTTTGGTGTAAGAATTAACTGA 999 0.4114 MMMNNVRSNNNMQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSATIKLRSGESHRNFPWNHQTVQEPLFQSHYSTEAVLSMIRDGTYPSKFASFLLSTQTLTLTLNGVVDEQITTSARNNVKGEEKFSCTQLFQKELTPSDVGKLNRLVIPKKHASRYFPCVSEADNNNDNYGTMMDINNSDTELVFYDKLMRSWKFRYCYWRSSQSFVFTRGWNRFVKDKRLKAKDVIVFYKCEPIINNNGGQVFYLIDAIYNNEDINVNESSRTQSFGKMSFDNIRTEEDEDKDHDDGGDETEERKEMLHSPTDHVAQKGLKLFGVRIN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1886 332 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Lele23g1886 332 CDD B3_DNA 143 243 IPR003340 GO:0003677
Lele23g1886 332 MobiDBLite consensus disorder prediction 302 316 - -
Lele23g1886 332 Pfam B3 DNA binding domain 144 243 IPR003340 GO:0003677
Lele23g1886 332 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Lele23g1886 332 Pfam AP2 domain 14 60 IPR001471 GO:0003700|GO:0006355
Lele23g1886 332 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 11 331 IPR044800 GO:0003700
Lele23g1886 332 ProSiteProfiles AP2/ERF domain profile. 14 69 IPR001471 GO:0003700|GO:0006355
Lele23g1886 332 SMART B3_2 144 263 IPR003340 GO:0003677
Lele23g1886 332 Gene3D - 139 268 IPR015300 -
Lele23g1886 332 MobiDBLite consensus disorder prediction 290 320 - -
Lele23g1886 332 ProSiteProfiles B3 DNA-binding domain profile. 144 263 IPR003340 GO:0003677
Lele23g1886 332 SMART rav1_2 14 75 IPR001471 GO:0003700|GO:0006355
Lele23g1886 332 FunFam AP2 domain-containing protein RAP2.8 13 70 - -
Lele23g1886 332 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Lele23g1886 332 SUPERFAMILY DNA-binding pseudobarrel domain 142 245 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1886 Lele-ChrLele23 22073179 22074177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1886 10 262 RAV Transcription Factor Family AT1G51120 58.077 4.93e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Lele23g1886 B3 1.7e-25 CL0405