Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1868 ATGAATAGCATGAGGATTTTGATCCGTCTTTTGTTCGGTTTTGAGTTGTTTCATTTTTTACCCGCGAGAATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTATGATTATTTGGTGAAGAAAAAATTGCATAATACTGCCAAGTCATTCATGACTGAAGGAAAGGTTGCGCCAGATCCAGTAGCAATTGATGCTCCTGGGGGGTTTCTTTTTGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCGAGGACAAACGAGAAACATTCCGAGTCTGCTGCAGCATATTTGGAGGCTCAACAGAATAAAGCAAAAGAACAGCAGCAGCTGCAAATGCAGCAGTTACAGCTCATGCGTCAAGCTCAGCTTCAAAGAAGGGATCCTAATCCTCCTCCTCATGGTGGTACTGTAAATGCTATTTCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCTGCAAAAATGTACGAGGAACGGATGAAACACTCTAACCCAATGGATACTGAGACATCCCAACCACTTATAGATGCTAGAATGGCCCTTTTGAAGTCAACAACCAGTCATCCTGGTCAGATGGTTCAAGGAAATACTGGAAGTGTGACTGCAGCTTTGCAACACATGCAGGCTCGAAATCAGCAACCTCCTCAGGACATTAAAAGTGAAGTCAACATGGGCACGATGCAACGATCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGAGCAATGCAATCAAAACCAGGAGTAGTAAATCCAGGACTGAATCCAGGAGTTGGTGGTCTCACACTGAAGGGATGGCCTTTAACTGGCATAGATCAAATTCGGCCAGGTTTGGGAGCACCAGTTCAAAAACCTCTACTTCAAAGTGCCAATCAGTTCCAGCTTTTGCCCCAACATCAACAACAACAACTCTTGGCACAGGTTCAGGGACAAGGAAATATTACCAGTTCACCAATGTATGCAGATATGGATCCTCAACGGTTGAGGGGATTAGCTAGGGGTAGTTTGAATGCAAAAGATGGCCAACCTATTGCAAATGATGGATCAATTGGTTCTCCGATGCAATCCACTTCATCTAAGATCAACATGCCACAGATGCAACAATCTACCACTCAGCAACAGCAGGATCCTTTGCACCCACAGCAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACATCTTCAGGGGCTGCCAACAGCACTGGTACAGGAAACACGATCGGCCCTTCCAATTCCCAGCCATCAACCCCATCTACTCATACTCCTTGTGATGGAGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAGGCTTGATGATTTATGGGGCTGATGGCACGGGTGGTCTTGCGTCGTCCACAAATCAACTGTTGCAGGATGACATGGAACGTTTCGGAGATGTTGGCTCCTTAGATGATAATGTGGAGTCATTTCTTTCACATGACGATGGTGATGGAAGAGATTTGTTTGGGACCTTGAAACGGAACACTTCTGAGCACACAACAGATGCATCAAAAGGCTTTTCCTTTAGTGAAGTCGGCTCCATACGCAAGAGCAATGGCAAAGTTGTGTGCTGTCACTTCTCATCAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGAGAGCACTTCAGAGGAACACACTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCATCTCAGCTTGCTACTTCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTGCAGATCCAAACTACTTTTGTTTGCAGCAGACATATGCAGGCCATACCTCTCATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCCTGCGATGCCAACAGTGAAATTCGCTTTTGGAATATTAGTCAATATTCCTGCACTCGCGTTTCCAAGGGAGGCTCTGCACAGGTAAGGTTTCAGCCAAGAATAGGACACCTTCTGGCTGCAGCGGCTGGTAATGTTGTATCCCTCTATGACGTAGAGACTGACAGGCTGGTTCAGTCATTACAGGGGCACACTACAGATGTGCATTCTGTTTGTTGGGATACCAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAGGGTGTGGTCATTGGCCTCTGGGGATTGCATTCACGAGCTTAGCTCCAGTGGGAACATGTTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCAGAGAATAAATGCATGACAATACCAGCTCATGAGTGTGTGATATCGGCTTTAGCACAATCACCAGTGTCAGGAATGGTTGCTTCTGCGAGTCATGACAAGTCCGTCAAGATTTGGAAATGA 2439 0.4543 MNSMRILIRLLFGFELFHFLPARMAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQQNKAKEQQQLQMQQLQLMRQAQLQRRDPNPPPHGGTVNAISSEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLIDARMALLKSTTSHPGQMVQGNTGSVTAALQHMQARNQQPPQDIKSEVNMGTMQRSLPMDPSSIYGQGAMQSKPGVVNPGLNPGVGGLTLKGWPLTGIDQIRPGLGAPVQKPLLQSANQFQLLPQHQQQQLLAQVQGQGNITSSPMYADMDPQRLRGLARGSLNAKDGQPIANDGSIGSPMQSTSSKINMPQMQQSTTQQQQDPLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKGLMIYGADGTGGLASSTNQLLQDDMERFGDVGSLDDNVESFLSHDDGDGRDLFGTLKRNTSEHTTDASKGFSFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTESTSEEHTLIITDVRFRPNSSQLATSSFDTTVRLWDAADPNYFCLQQTYAGHTSHVMSLDFHPKKNDLFCSCDANSEIRFWNISQYSCTRVSKGGSAQVRFQPRIGHLLAAAAGNVVSLYDVETDRLVQSLQGHTTDVHSVCWDTNGDYLASVSQESVRVWSLASGDCIHELSSSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPVSGMVASASHDKSVKIWK 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1868 812 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 570 IPR001680 GO:0005515
Lele23g1868 812 Coils Coil 101 130 - -
Lele23g1868 812 MobiDBLite consensus disorder prediction 357 432 - -
Lele23g1868 812 ProSiteProfiles Trp-Asp (WD) repeats profile. 698 738 IPR001680 GO:0005515
Lele23g1868 812 ProSiteProfiles Trp-Asp (WD) repeats profile. 571 603 IPR001680 GO:0005515
Lele23g1868 812 CDD WD40 525 812 - -
Lele23g1868 812 ProSitePatterns Trp-Asp (WD) repeats signature. 548 562 IPR019775 -
Lele23g1868 812 SMART WD40_4 691 729 IPR001680 GO:0005515
Lele23g1868 812 SMART WD40_4 609 649 IPR001680 GO:0005515
Lele23g1868 812 SMART WD40_4 732 771 IPR001680 GO:0005515
Lele23g1868 812 SMART WD40_4 522 561 IPR001680 GO:0005515
Lele23g1868 812 SMART WD40_4 773 812 IPR001680 GO:0005515
Lele23g1868 812 SMART WD40_4 564 603 IPR001680 GO:0005515
Lele23g1868 812 SMART WD40_4 652 688 IPR001680 GO:0005515
Lele23g1868 812 PRINTS G protein beta WD-40 repeat signature 799 812 IPR020472 -
Lele23g1868 812 PRINTS G protein beta WD-40 repeat signature 548 562 IPR020472 -
Lele23g1868 812 PRINTS G protein beta WD-40 repeat signature 590 604 IPR020472 -
Lele23g1868 812 ProSiteProfiles LIS1 homology (LisH) motif profile. 31 63 IPR006594 GO:0005515
Lele23g1868 812 Pfam WD domain, G-beta repeat 573 603 IPR001680 GO:0005515
Lele23g1868 812 Pfam WD domain, G-beta repeat 778 812 IPR001680 GO:0005515
Lele23g1868 812 Pfam WD domain, G-beta repeat 694 729 IPR001680 GO:0005515
Lele23g1868 812 Pfam WD domain, G-beta repeat 612 649 IPR001680 GO:0005515
Lele23g1868 812 Pfam WD domain, G-beta repeat 534 561 IPR001680 GO:0005515
Lele23g1868 812 Pfam LisH 33 59 IPR006594 GO:0005515
Lele23g1868 812 SUPERFAMILY WD40 repeat-like 523 812 IPR036322 GO:0005515
Lele23g1868 812 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 658 IPR001680 GO:0005515
Lele23g1868 812 SMART Lish 31 63 IPR006594 GO:0005515
Lele23g1868 812 MobiDBLite consensus disorder prediction 128 148 - -
Lele23g1868 812 Gene3D - 498 663 IPR015943 GO:0005515
Lele23g1868 812 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 24 812 IPR044716 GO:0003714
Lele23g1868 812 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 780 812 - -
Lele23g1868 812 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 571 603 - -
Lele23g1868 812 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 616 651 - -
Lele23g1868 812 MobiDBLite consensus disorder prediction 345 435 - -
Lele23g1868 812 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 529 564 - -
Lele23g1868 812 Gene3D - 664 812 IPR015943 GO:0005515
Lele23g1868 812 ProSiteProfiles Trp-Asp (WD) repeats profile. 780 812 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1868 Lele-ChrLele23 21954668 21964435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1868 547 772 U-box Gene Family AT2G33340 29.167 1.42e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lele23g1868 WD40 0.0041 CL0186