Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1864 ATGACCAAGTTTCGAATCGGAGAAGCTTCCGGCGAAAGCAGTCACATGAATAACAGCGGCATGGTGGATTATATGCTCCACAACAACACCCCTCCTCCTCCTCAACAACCACCTTGTGGGTTTTATGGTACACCCGTTTGTTCTTCTTTTGATAAGCTGAGTTTCGCAGATGTGATGCAGTTTGCAGATTTCGGACCCAACTTGGCATTAAACCAGACCAAGAATAACTGTACTACTGAAGGAGAAGAAGATCATTCTGGGATGGACCCGGTTTTCTTCCTCAAGTTCCCTGTGTTGAATGACAAATCCTTGGAGGATCGTCAGAATCTGAAGGGGACAGGTGAAGATGGAGGAGTGATGAGAGAGGATGAAGTAGAAGAAGCTCGAGTCTCTGATAGTAATAATAATAAGTCGGTGCAGCAACATGGGTTTGTAGGAGAAGACATGGACAAGAATAACAGTAACCCTACAAGCACAGTTCAGGAGAACAACAACAACAATACAAATAATAATAAGACCAAGAGGAAGAGACCCAGAAGCATCAAAACCAACGAGGAGGTAGAGAGCCAGCGTATGACTCACATCGCCGTCGAAAGAAACCGCCGGAAGCAAATGAACGAGCACCTTCGCGTCCTCAGATCCCTCATGCCCGGTTCTTACGTCCAAAGGGGGGATCAAGCTTCTATAATAGGAGGAGCGATAGAGTTTGTGAGGGAATTAGAGCAGCTTCTTCAGTGCTTGGAGTCACAGAAGAGAAGGAGGTTACTGGGAGAAGCTCATTCAAGGCAACAAGTTGGGGATTCTTCTTCTGTTACAATACATCAGGCGCAGCAACCACAAACTCCATATTTTCCAGCTTTGGCGCCTTTGCCAAATGTTGAGTTTGAGAGTGGGCTCAGGGAAGAAACTGCAGAGAACAAGTCGTGTCTTGCTGACGTGGAAGTCAAGCTTATAGGATTTGATGCGATGATCAAGATCCTATCAAGAAGAAGACCAGGCCAGTTGATTAAGACCATAGCTGCACTCGAAGATTTGCAGCTTATTATCCTCCACACAAATATCACCACCGTTGAACAAACTGTTCTTTATTCTTTCAATGTCAAGGTTGCAGGTGATTCAAGATTTACAGCGGAAGATATAGCCAGCTCTGTCCAACAGATATTCAGTTTCATTCACGAGAACACTGGAATGTAA 1194 0.4506 MTKFRIGEASGESSHMNNSGMVDYMLHNNTPPPPQQPPCGFYGTPVCSSFDKLSFADVMQFADFGPNLALNQTKNNCTTEGEEDHSGMDPVFFLKFPVLNDKSLEDRQNLKGTGEDGGVMREDEVEEARVSDSNNNKSVQQHGFVGEDMDKNNSNPTSTVQENNNNNTNNNKTKRKRPRSIKTNEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAHSRQQVGDSSSVTIHQAQQPQTPYFPALAPLPNVEFESGLREETAENKSCLADVEVKLIGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTVEQTVLYSFNVKVAGDSRFTAEDIASSVQQIFSFIHENTGM 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1864 397 MobiDBLite consensus disorder prediction 105 131 - -
Lele23g1864 397 Pfam Helix-loop-helix DNA-binding domain 190 241 IPR011598 GO:0046983
Lele23g1864 397 PANTHER TRANSCRIPTION FACTOR FAMA 84 388 IPR044283 GO:0003700|GO:0010052
Lele23g1864 397 SMART finulus 195 246 IPR011598 GO:0046983
Lele23g1864 397 MobiDBLite consensus disorder prediction 1 20 - -
Lele23g1864 397 CDD bHLH_AtFAMA_like 192 259 - -
Lele23g1864 397 CDD ACT_UUR-ACR-like 323 387 - -
Lele23g1864 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 267 IPR036638 GO:0046983
Lele23g1864 397 MobiDBLite consensus disorder prediction 132 171 - -
Lele23g1864 397 FunFam Basic helix-loop-helix transcription factor 180 255 - -
Lele23g1864 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 240 IPR011598 GO:0046983
Lele23g1864 397 Gene3D - 182 255 IPR036638 GO:0046983
Lele23g1864 397 MobiDBLite consensus disorder prediction 105 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1864 Lele-ChrLele23 21930472 21931889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1864 6 397 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 59.080 4.58e-147 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele23g1864 HLH 8.3e-10 No_clan