LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele23g1856	ATGCAAGCAACTCAAGCGGCCACGAATGAAACTTCTGATAATTCACAAAAGACTGATCTTCAGTTAAACGAAGAAGTTTCAGATAATGGACCAAGTGGGAGGCGGCCAGATATTTCACTTCAAATCCCACCTAGACATTTAGGATTTGGAAGTACACGCGGTGTAAGGTCTCTGGACCATTCTCAAAGCTTCTCTAGAGGGATTCCATCGCCGCGAGGCTTTTTGCGGGCTTTGAGCCTCAAAAGGAAAGGCAACACAGCAGATGCTGAAAGAAGCAGCCTCCTCAGTTCAGATCCCAAGGCGGCTTCAGATAGTCCAAATGTGTCCAACTTAACATCTGCAATTTCATGGAAAAGATGTACTTCTCTTCCTGTCACGCCTGCTACAAATCTGTCCCCTTCAGTTCCTACACCTGCTTCTGCAAGGACATACAGTGAACAGCCTAAACGCCATAAAGATGCTGTTGCTGCTGGTTCCAAGGTTTCAAGGTCCCTCTCTGTGCCTGGGCGGAATATGGTTATTGTAAGATCTCTGTCTTTTGCTGCCCGGAGTGAGCATGCACAGCAAGATCAGAATGATGATCAAATAACTCCTGTACCAGTAGAAGATGCTGATGAAGAAATTCCTGAAGAGGAAGCAGTTTGCAGAATCTGTTATGATGTCTGTGATGAAAGGAACACTCTCAAATTGGAGTGCAGTTGTAAAGGCGACTTGACACTTGTTCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAAGGAAATAAGAAATGTGATGTCTGTGGCCAAGAGGTTCAGAATTTACCTGTAACATTGCTTCGTTTGCCCAGCTCTGCTCAGACAGGAAGGAGACAGGTGCAGGGTCAGCAGAACATGAATCCCGAGAGATTAAGCGCTTGGCAAGACTTCGTGGTGCTTGTCCTAATAAGCACAATATGCTATTTTTTCTTCCTCGAGCAGCTACTGCTTCCTGACATGACGACTCAAGCAATCATTATATCAGCACCATTTGCCTTTACCTTGGGTCTCTTGGCATCTATTTTTGCAGTCATCCTTGCAATAAAAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCTCTTGTGGCTATAACAGTACACGTGTTCTATTCTATGTTGCATTTGAAGGCCATTTATGCAATACTGCTTTCATCAGTTTTGGGTTTTGGTATGGCTATGAGCATCAACTATGTATATATCCAGTTTGTTTCTTGGCGTCTTCAAGTCTCCCATGATGCCAACCCAGTATGA	1272	0.4387	MQATQAATNETSDNSQKTDLQLNEEVSDNGPSGRRPDISLQIPPRHLGFGSTRGVRSLDHSQSFSRGIPSPRGFLRALSLKRKGNTADAERSSLLSSDPKAASDSPNVSNLTSAISWKRCTSLPVTPATNLSPSVPTPASARTYSEQPKRHKDAVAAGSKVSRSLSVPGRNMVIVRSLSFAARSEHAQQDQNDDQITPVPVEDADEEIPEEEAVCRICYDVCDERNTLKLECSCKGDLTLVHEECAIKWFSTKGNKKCDVCGQEVQNLPVTLLRLPSSAQTGRRQVQGQQNMNPERLSAWQDFVVLVLISTICYFFFLEQLLLPDMTTQAIIISAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAITVHVFYSMLHLKAIYAILLSSVLGFGMAMSINYVYIQFVSWRLQVSHDANPV	423

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele23g1856	423	MobiDBLite	consensus disorder prediction	127	162	-	-
	Lele23g1856	423	MobiDBLite	consensus disorder prediction	1	72	-	-
	Lele23g1856	423	MobiDBLite	consensus disorder prediction	1	28	-	-
	Lele23g1856	423	SUPERFAMILY	RING/U-box	211	265	-	-
	Lele23g1856	423	PANTHER	OS02G0165000 PROTEIN	47	418	-	-
	Lele23g1856	423	CDD	RING_CH-C4HC3_MARCH	215	262	-	-
	Lele23g1856	423	SMART	ringv_2	214	262	IPR011016	GO:0008270
	Lele23g1856	423	Pfam	RING-variant domain	215	261	IPR011016	GO:0008270
	Lele23g1856	423	MobiDBLite	consensus disorder prediction	85	109	-	-
	Lele23g1856	423	MobiDBLite	consensus disorder prediction	89	109	-	-
	Lele23g1856	423	ProSiteProfiles	Zinc finger RING-CH-type profile.	207	268	IPR011016	GO:0008270
	Lele23g1856	423	MobiDBLite	consensus disorder prediction	127	144	-	-
	Lele23g1856	423	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	201	269	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele23g1856	Lele-ChrLele23	21853296	21857228	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele23g1856	228	322	C3H Transcription Factor Family	AT5G59000	33.333	2.40e-11	61.6