Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1852 ATGGCGAGATACCGAAGCCGGAGCAGAAGCTACAGCCCTCGCCGGCGAAGCGGAACCCCTCCGCGTGGACGCAAGCGGTACGACGATGAACCTCGTGATCGCCACAGTGAAAGCAGATCCTACAGGGACCGCCGCTCTCCTGCTCCTTCAGGCTTGCTTGTCCGTAATCTTCCGCTCGATGCTAGGCCTGAAGATCTTAGGGGCCCCTTTGAGCGCTATGGCCCAGTGAAAGACGTGTATCTTCCTAAGAATTACTACACTGGCGAGCCCCGGGGCTTTGGCTTTGTAAAATTCCGGTATGCTGAAGATGCTGCTGAAGCAAAGCAACAACTTAATCATACCGTTATTGGTGGACGGGAAATAAGAATTGTTTATGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGTTCGAGTGCTCGCATAAGTGGTCGATATGGCGGAAATGGTAGAAGGAGAACTCCCACAAGATCCCCAAGGCACCGATATCGTTCCTACTCAAGGTCTCTATCACCAGCTGGGGATCACACAAGGGATCATAAGGACAGGGACGATTATTATTCTCCAGAGCGATCAAGATCTTATTCCAGGTCTCCTTCGCCTCGTGGAAGGAAGGATTCCAGGAGGTCCCCAACTCCAAGGGAGAATGGTCGGAGTCCTGATGACAAGAGGGATCATACACGTAGTAGATCAGAGAGTCCCAGGGGCAATGGTCGCAGTCCCTCAAGGTCTCGTTCACGTTCATACAGTCCTCGTTGA 759 0.5204 MARYRSRSRSYSPRRRSGTPPRGRKRYDDEPRDRHSESRSYRDRRSPAPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQQLNHTVIGGREIRIVYAEENRKTPQEMRSSARISGRYGGNGRRRTPTRSPRHRYRSYSRSLSPAGDHTRDHKDRDDYYSPERSRSYSRSPSPRGRKDSRRSPTPRENGRSPDDKRDHTRSRSESPRGNGRSPSRSRSRSYSPR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1852 252 Gene3D - 2 140 IPR012677 -
Lele23g1852 252 SUPERFAMILY RNA-binding domain, RBD 46 154 IPR035979 GO:0003676
Lele23g1852 252 SMART rrm2_1 51 124 IPR003954 GO:0003676
Lele23g1852 252 SMART rrm1_1 51 124 IPR000504 GO:0003723
Lele23g1852 252 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 142 - -
Lele23g1852 252 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 46 249 - -
Lele23g1852 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Lele23g1852 252 MobiDBLite consensus disorder prediction 22 44 - -
Lele23g1852 252 MobiDBLite consensus disorder prediction 234 252 - -
Lele23g1852 252 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Lele23g1852 252 MobiDBLite consensus disorder prediction 1 68 - -
Lele23g1852 252 MobiDBLite consensus disorder prediction 130 252 - -
Lele23g1852 252 MobiDBLite consensus disorder prediction 173 233 - -
Lele23g1852 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1852 Lele-ChrLele23 21833540 21837705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1852 54 112 Eukaryotic Initiation Factors Gene Family AT3G11400 45.763 2.24e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0200 21 1338033 1342399 Lele23g1852 23 21833540 21837705 hybridization
Lele22g0204 22 1253802 1258460 Lele23g1852 23 21833540 21837705 hybridization