LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele23g1847	ATGGACCACGATCGCCTTTCCTCAAGTTCTACCTTTTGGCTTCGTTTTGTTACATTGTTATTTGCTGAGGAAGAGGATGATGATATTCGCAGCGTTGAACCCGTTGAATTAGGAAAGGGGGACTCAAAAGAGAAGAAGCCTTCTTCAAAAGGCAGGCGGGCTCGGACTGGGTATTCTGATTCCATTAGAGAATTGGACTTGAATTCTTTATATATTAAAGAGGAAGGAGCACCTGAGTGGTCTGCTATGCATGATGACTGCCTGAGAAGTTTAGAATATGAAGCTTCTTCTTCCGATGCCAGCACTTTTGATTCTGAGTGTCCACCAGATGCTGCAAACAATGCCCAATGGCGTGGCCTGCTTAAATTCAGGAAAAAAGGAGGATCCCACATGCGTTTCGCTCATCCACCTAAAAATATTCCCAAACTTACCCGAAAAACAGTTAAACGAATCAAGGAGGAACTCATGCCTGGTCCACATTCTTCAGTTTCATCCCCATCTCTTGATCCGGATTTTTACTGCTTCAAGTCTTCATGGATAAACTTTTCTTTTGCACAGCTCAACGCTGCCACCGACAACTTTAGTGATGATTTGTTGATTGGGAAGGGAGGTTATGCTGAGGTTTACAAGGGAAAAATGGAAGATGGGACATATGTTGCGATCAAACGGCTGATGAAAGGAAGCCAAGAGGAAATGACAGCTGATTTCTTGTCTGAACTCGGTATTATAGTTCATGTTGATCATCCCAATATTGCCAGATTGATTGGTTATGGTGTGGAAGGGGGCATGTTTCTTGTTCTTCAGTTATCTCCACACGGCAGCCTCGCCGGCATTCTTTATGGACCTCGAGAGAGACTGGATTGGAACATCAGATTTAAGGTTGCTCTAGGGACTGCAGCGGGCCTTCAATATCTGCACGAGGGATGTCAAAGAAGGATCATTCACAGAGATATCAAGGCTGCTAATATTCTGCTGTCAGAGGATTTTGAGCCTCAGGTGTCTGATTTTGGGCTTGCAAAGTGGTTACCTGATCAATGGACTCACCATACTGTGGACAAAATTGAAGGCACATTTGGTTACCTTCCTCCCGAATTCTTCATGCATGGTATAGTAGATGAAAAGACTGATGTCTATGCTTATGGAGTGCTATTACTTGAGCTCATTACAGGAAGACCGGCTTTGGATAGCTCTCAGAAAAGTTTGGTGATGTGGGCAAAACCGTTGCTGTCTGTGGATAAAATAAAAGAGTTGGTTGATCCATGTCTGAGTGATGCTTATGATGAAGAGCAGATGAAAATTGTGGTGATGATAGCTTCCTTGTGTATAGAGCAGTGTTCAGTTGAGCGACCACATATGAGCGAGGCAAGTTCTATGCAAGTGTTGAAGACTCTAAGAGGAGAAGAAGAGGGCTTGAAGTTCTTAATGCAGCGGCAGAAGTCAAAACTGAGAAGGACGTATTCTGTAGAGCTGTTAGACGCAGAGGATTACAACTCCACCAAGTATTTGAGTGACATGAATAGAGAGACGAGTCCTGAGAACTCTGAATCTTTGAATGAACAAAACATTCAGAACAATAATTCCTCCAACTTCATCCCTCTCCTTTCTCTGTCGGGTCACTCTAACCATGGAGGTGGGTCAGATTCAGAGACAGTGGGTCGACTGCATGAAATCCTTGTTCACCGAGTTGTGACTTGTGCTTCTTGTTATTTTCTGTTATATGGGGGGCGAAAAAAGGGCTTCCTTGATTCTGAGTTCTTACAACTCAAGCAACTACAAGACGAGACCAACCCTGAATTTGTTGGTGAAGTTGCGACCCTCTTCTTTGAAGATTCTGAGAGGCTTCTTACTGATCTCACCAATGCTCTAGATCAGAAAGCAATTGACTTCAAAAAAGTTGATGCCCATGTTCACCAGTTGAAGGGTAGCAGCTCAAGCTTAGGCGCTCAGAGGGTAAAAAATGCCTGCATTGCTTTCCGCAGCTTTTGCGAGGAACAGAATGTGGATGCGTGCCGGAGATGTCTGCAACAAGTAAAGCAAGAGTACCGCCTTGTCAAAACTAAACTTGAAACTCTGCTTGGGCTTGAGGAACAAATCGTTGGAGCTGGTGGGTCGATCCCTATGATGGAACTGAGTTTGTAA	2139	0.4409	MDHDRLSSSSTFWLRFVTLLFAEEEDDDIRSVEPVELGKGDSKEKKPSSKGRRARTGYSDSIRELDLNSLYIKEEGAPEWSAMHDDCLRSLEYEASSSDASTFDSECPPDAANNAQWRGLLKFRKKGGSHMRFAHPPKNIPKLTRKTVKRIKEELMPGPHSSVSSPSLDPDFYCFKSSWINFSFAQLNAATDNFSDDLLIGKGGYAEVYKGKMEDGTYVAIKRLMKGSQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLAGILYGPRERLDWNIRFKVALGTAAGLQYLHEGCQRRIIHRDIKAANILLSEDFEPQVSDFGLAKWLPDQWTHHTVDKIEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRPALDSSQKSLVMWAKPLLSVDKIKELVDPCLSDAYDEEQMKIVVMIASLCIEQCSVERPHMSEASSMQVLKTLRGEEEGLKFLMQRQKSKLRRTYSVELLDAEDYNSTKYLSDMNRETSPENSESLNEQNIQNNNSSNFIPLLSLSGHSNHGGGSDSETVGRLHEILVHRVVTCASCYFLLYGGRKKGFLDSEFLQLKQLQDETNPEFVGEVATLFFEDSERLLTDLTNALDQKAIDFKKVDAHVHQLKGSSSSLGAQRVKNACIAFRSFCEEQNVDACRRCLQQVKQEYRLVKTKLETLLGLEEQIVGAGGSIPMMELSL	712

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele23g1847	712	ProSitePatterns	Protein kinases ATP-binding region signature.	200	222	IPR017441	GO:0005524
	Lele23g1847	712	SUPERFAMILY	Protein kinase-like (PK-like)	182	467	IPR011009	-
	Lele23g1847	712	Gene3D	Transferase(Phosphotransferase) domain 1	271	482	-	-
	Lele23g1847	712	MobiDBLite	consensus disorder prediction	32	57	-	-
	Lele23g1847	712	Pfam	Protein kinase domain	198	457	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele23g1847	712	SUPERFAMILY	Histidine-containing phosphotransfer domain, HPT domain	580	698	IPR036641	GO:0000160
	Lele23g1847	712	ProSiteProfiles	Protein kinase domain profile.	194	461	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele23g1847	712	MobiDBLite	consensus disorder prediction	30	57	-	-
	Lele23g1847	712	PANTHER	OS08G0249100 PROTEIN	71	504	-	-
	Lele23g1847	712	Gene3D	HPT domain	574	712	IPR036641	GO:0000160
	Lele23g1847	712	Pfam	Hpt domain	603	682	IPR008207	GO:0000160
	Lele23g1847	712	FunFam	Histidine-containing phosphotransfer protein 1	572	706	-	-
	Lele23g1847	712	SMART	serkin_6	194	434	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele23g1847	712	CDD	HPT	602	682	IPR008207	GO:0000160
	Lele23g1847	712	ProSiteProfiles	Histidine-containing phosphotransfer (HPt) domain profile.	596	701	IPR008207	GO:0000160
	Lele23g1847	712	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	271	479	-	-
	Lele23g1847	712	FunFam	Receptor-like cytosolic serine/threonine-protein kinase RBK1	170	269	-	-
	Lele23g1847	712	Gene3D	Phosphorylase Kinase; domain 1	163	268	-	-
	Lele23g1847	712	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	313	325	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele23g1847	Lele-ChrLele23	21797446	21803123	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele23g1847	164	468	Receptor kinase-like Gene Family	AT1G53420	40.895	1.81e-66	234

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Lele23g1847		Pkinase	6.3e-39	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele21g0205	21	1372497	1374002	Lele23g1847	23	21797446	21803123	hybridization
	Lele22g0208	22	1290120	1291536	Lele23g1847	23	21797446	21803123	hybridization