Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1838 ATGGGTTGTGTCCACGGCAAGTGTTGTAGCCGCTACCCGCCGCCGTCCGAGGGTGGTTCTGTGGACCGCCCAGAACTCGGTCCTTCCAGTTTCCAGCCGAAACACATACTTACTCAGAAATCATTGGAGTCTATTCCCGTTCCGTCCCACAACTTCACTTTGGAATACTCCGTTCTTACCCAGAGAGGATATTACCCTGACACGCCAACCAAAGAAAACCAAGATAGTTACTGCATTAGGACGCAAATTCAAGGCAACCAAAGTATACATTTCTTTGGTGTCTATGATGGGCACGGCCAATACGGTAGTCAGTGTTCTAACTTTGTTGAAGATAGGTTGGTAGAGACATTATCAAATGACCACACTTTGTTGGATGACCCTGTTAAAGCATATGCTTCAGCATTTGTATCAACTAATCAAGAATTGCACGATTCTGAGATTGATGATTCTATGAGCGGCACTACTGCAATCACAGTGCTTGTTGTTGGAGACGTTCTATATGTTGCTAATGTTGGTGATTCGCGAGCAGTTTTAGCTGTTAAGGATGGGAACCGCATTGTTGCCGAGGACTTGTCCTCTGATCAGACACCGTTCAGAAGAGATGAATGTGAGAGAGTGAAGCTTTGTGGGGCAAGGGTGCTGAGTGTTGATCAGGTGGAAGGGCTTAAGGATCCAAATATTCAGACTTGGGGTGATGAAGAGAGCCAGGGTGGTGATCCTCCCAGGTTATGGCTTCCAAACGCGATGTATCCCGGAACTGCATTTACAAGGAGTGTAGGGGATAGTTTAGCAGAGACCATTGGTGTCATTGCTATTCCAGAGGTTTCAATGGTTCGGCTTACGCCTAATCATCCATTTTTTATCGTTGCAAGTGATGGCGTGTTCGAGTTCCTATCTAGCCAAACTGTTGTTGATATGGCAGCAAGCTATTCAGATCCCCGTGATGCATGTGCGGCAATTGCTGGAGAATCATATAAACTATGGCTGGATCACGAGAGCCGAACAGATGATATAACAATTATCATTGTTCATATCAAAAGCCTGTCTAATTCAGTTACACGTGTGGCATCAAGTGAGATCAATGTTAGTGCTTTAGCAAGGGCCAAGTCCAGGAGAGGAACTTTGGAGATATCTCCAACCACATCTGATGTTCATGGTTCTGTGGGGAATAACTTGTCTCATTTACAGTCCTGTCAGCATTTGGTCTCCATGAGGAATGCAGCAATAGTGGTCCCGTCTCCGGCGTGCCAAAGTGAGATTTTCTTGTCCCTTTCTTCTTTAACAGTGAATGAAGAAGAGGGAGGCTTTACGGAAAGCTTCCCTGTGACTCTTTGCGGCTTCCCCGAAATGGTACATTTCTCCAATCTATTCTCTTCAAGCCCTTTTGCATTGTTGCAGTTGACTTATGAGTCATGA 1416 0.4555 MGCVHGKCCSRYPPPSEGGSVDRPELGPSSFQPKHILTQKSLESIPVPSHNFTLEYSVLTQRGYYPDTPTKENQDSYCIRTQIQGNQSIHFFGVYDGHGQYGSQCSNFVEDRLVETLSNDHTLLDDPVKAYASAFVSTNQELHDSEIDDSMSGTTAITVLVVGDVLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDECERVKLCGARVLSVDQVEGLKDPNIQTWGDEESQGGDPPRLWLPNAMYPGTAFTRSVGDSLAETIGVIAIPEVSMVRLTPNHPFFIVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLDHESRTDDITIIIVHIKSLSNSVTRVASSEINVSALARAKSRRGTLEISPTTSDVHGSVGNNLSHLQSCQHLVSMRNAAIVVPSPACQSEIFLSLSSLTVNEEEGGFTESFPVTLCGFPEMVHFSNLFSSSPFALLQLTYES 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1838 471 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Lele23g1838 471 Gene3D - 44 347 IPR036457 -
Lele23g1838 471 PANTHER PROTEIN PHOSPHATASE 70 344 - -
Lele23g1838 471 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Lele23g1838 471 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Lele23g1838 471 SUPERFAMILY PP2C-like 45 347 IPR036457 -
Lele23g1838 471 CDD PP2Cc 71 345 IPR001932 -
Lele23g1838 471 SMART PP2C_4 51 343 IPR001932 -
Lele23g1838 471 Pfam Protein phosphatase 2C 84 320 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1838 Lele-ChrLele23 21736430 21739389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1838 1 350 PP2C-type Phosphatase Gene Family AT3G06270 73.714 0.0 532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1838 23 21736430 21739389 Lele15g1517 15 8984420 8988913 CCT
Lele23g1838 23 21736430 21739389 Lele23g1838 23 21736430 21739389 ECH
Lele21g0216 21 1425481 1427805 Lele23g1838 23 21736430 21739389 hybridization
Lele22g0224 22 1354609 1356838 Lele23g1838 23 21736430 21739389 hybridization