Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1818 ATGATTAGGCCATCCTCAAAAGTCATTATCAAGTTCCTCTTGGTCATGCAGAAGCATGGATACATTGGGGAGTTTGAATATGTGGATGACCACAGGGCTGGCAAAATTGTGGTTGAGCTGAATGGAAGATTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATGTAGGTGTCAAAGATATAGAACCCTGGACTGCAAGGCTACTTCCCTCAAGACAGTTTGGCTACATAGTCTTGACAACCTCAGCTGGTATTATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGGAAAGTGTTGGGTTTCTTTTACTAG 318 0.4277 MIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKDIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1818 105 Gene3D - 1 44 - -
Lele23g1818 105 Pfam Ribosomal protein S8 4 105 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lele23g1818 105 FunFam 40S ribosomal protein S15a 45 105 - -
Lele23g1818 105 FunFam 40S ribosomal protein S15a 1 44 - -
Lele23g1818 105 SUPERFAMILY Ribosomal protein S8 2 105 IPR035987 GO:0003735|GO:0005840|GO:0006412
Lele23g1818 105 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 104 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lele23g1818 105 ProSitePatterns Ribosomal protein S8 signature. 75 92 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lele23g1818 105 Gene3D - 45 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1818 Lele-ChrLele23 21640024 21640587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1818 1 105 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 96.190 3.78e-73 211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0249 22 1458895 1460555 Lele23g1818 23 21640024 21640587 hybridization